Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d05
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            31   0.59 
SB_48804| Best HMM Match : DUF21 (HMM E-Value=0.31)                    30   1.8  
SB_52035| Best HMM Match : RVT_1 (HMM E-Value=0.067)                   28   5.5  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 257 IKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFS 388
           IK    I   VN GS+ L+ S      SS++TTKL + S+P  S
Sbjct: 171 IKDGETIGDYVNIGSVELSSSAATPSSSSITTTKLSSLSTPSLS 214


>SB_48804| Best HMM Match : DUF21 (HMM E-Value=0.31)
          Length = 438

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 500 AAPKHQTNVVEL*CFLCFGTILVSSFHLLQLFYTLLKQKN 381
           AAP   +++  L  FLCFG ++V   ++L  FY  +  K+
Sbjct: 80  AAPFVLSSLCALAAFLCFGALMVFICYILHFFYIWVYDKS 119


>SB_52035| Best HMM Match : RVT_1 (HMM E-Value=0.067)
          Length = 344

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 446 QNKENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVE 556
           ++K  T VP   F  L+P  +  A ++FQ T+S  +E
Sbjct: 226 ESKLTTFVPPFCFNRLLPFRISSAPEVFQRTMSMTLE 262


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 313  RKVNASIVNIRFYVQFTLYFLL*KVKLSQNY 221
            R+V+ S +N R+Y   TL+F L   K SQ +
Sbjct: 1953 REVHVSGINTRYYGSKTLFFTLHYAKQSQGF 1983


>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 470 PLHWFGVLVPQN-LHMAQKIFQTTLSYVVECSNIQLQLEENMKNINA 607
           P  +F VL+  +  H+ + + ++T  YVV  +   L +E  +K++NA
Sbjct: 331 PGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNA 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,421
Number of Sequences: 59808
Number of extensions: 358982
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)