Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d05
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z36753-8|CAA85336.1| 326|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z72508-5|CAA96638.1| 525|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical... 28 6.4
Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenase... 27 8.5
AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenase... 27 8.5
>U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical
protein T01B11.1 protein.
Length = 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 443 TILVSSFHLLQLFYTLLKQKNRDYFQWVIWLYSQN 339
T+L+S + + FY L+K+K +YF ++I + + N
Sbjct: 24 TVLISLLLVAKAFYNLMKRKRSNYFVFLISIIAAN 58
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 194 EPAHDLLDKVILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQS 340
+ A D+ D +++ L E ++ EL NV+ G++H+A + + G+S
Sbjct: 69 DAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGES 117
>Z36753-8|CAA85336.1| 326|Caenorhabditis elegans Hypothetical
protein T09A5.9 protein.
Length = 326
Score = 29.1 bits (62), Expect = 2.8
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +2
Query: 221 VILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIM 400
V L LDL E ++ ++ES VN S+ L+ +R TKL T + S
Sbjct: 81 VTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQINGLDKLTKLETL----YLVSNK 136
Query: 401 CKTIEE-DGMTKLKLYQNKENTIVPLHWFGVLV 496
+ IE + +T+LKL + +N I + G LV
Sbjct: 137 IEKIENLEALTQLKLLELGDNRIKKIENIGHLV 169
>Z72508-5|CAA96638.1| 525|Caenorhabditis elegans Hypothetical
protein F28H7.6 protein.
Length = 525
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Frame = +2
Query: 224 ILRQLDLLEQKIKCELNIESNVN--NGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASI 397
IL +++ E+ + ++++E+ VN NG ++++ + K +P F ++I
Sbjct: 14 ILHKIETFEENTEFDVHVETLVNTKNGGDPSFLTKFVNDKGIPQGLKGENYINPSFCSNI 73
Query: 398 MCKTIEEDGMTKLKLYQNKENTIVPLH-W-------FGV-LVPQNLHMAQKIFQTTLSYV 550
+ + ++ + + Q+K +++ L+ W FGV L+ + ++QT L+Y+
Sbjct: 74 DDQVLTDEKYSNCTILQSKNGSVLKLNFWTNFDTFKFGVNLLELKNVTLELVYQTELTYL 133
>U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical
protein D2024.4 protein.
Length = 294
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 530 QTTLSYVVECSNIQLQLEENMKNINALRKYLN 625
+TT + C N++ ++EN +N L+K+L+
Sbjct: 105 KTTCKFCSLCENVKENVKENESKLNKLKKFLS 136
>AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical
protein Y39B6A.22 protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 401 CKTIEEDGMTKLKLYQNKENTIVPLH 478
C + G TKLK Y NK ++ V L+
Sbjct: 101 CNGFPDSGHTKLKFYSNKSSSFVDLN 126
>Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical
protein R07B5.7 protein.
Length = 351
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 504 FCGTKTPNQCSGTIVFSLFWYNFS-FVIPSSSIVLHII 394
+C T PNQ I F F++N+S V P +L +I
Sbjct: 108 YCATVYPNQYIKLIFFLTFYFNYSAMVFPFLLCLLRLI 145
>AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform c protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 295 WKHSPCEVSIHYGTKF 342
WKH+P EV YG KF
Sbjct: 250 WKHAPNEVKQEYGEKF 265
>AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform a protein.
Length = 368
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 295 WKHSPCEVSIHYGTKF 342
WKH+P EV YG KF
Sbjct: 275 WKHAPNEVKQEYGEKF 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,078
Number of Sequences: 27780
Number of extensions: 299070
Number of successful extensions: 911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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