Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d05
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   1.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
 Frame = +2

Query: 245 LEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDG 424
           L+ +I C L+I     + +   A     +GQ ++    + T++   F +S  C  ++ DG
Sbjct: 63  LDYRISCLLSIFKQEFDET-ERASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDG 121

Query: 425 M---TKLKLYQNKENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVECSNIQLQL-EENM 592
               T L++  +     + +H +  LV   LH+  + F      +     +QL + + ++
Sbjct: 122 QGGRTFLRVLLH-----LAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLVSDSDV 176

Query: 593 KNINALRKYLNII 631
           ++   ++  L+++
Sbjct: 177 ESYKQIKSDLDVL 189


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
 Frame = +2

Query: 245 LEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDG 424
           L+ +I C L+I     + +   A     +GQ ++    + T++   F +S  C  ++ DG
Sbjct: 31  LDYRISCLLSIFKQEFDET-ERASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDG 89

Query: 425 M---TKLKLYQNKENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVECSNIQLQL-EENM 592
               T L++  +     + +H +  LV   LH+  + F      +     +QL + + ++
Sbjct: 90  QGGRTFLRVLLH-----LAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLVSDSDV 144

Query: 593 KNINALRKYLNII 631
           ++   ++  L+++
Sbjct: 145 ESYKQIKSDLDVL 157


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 254 FALKGQVVSKLLYPINRELVQYLTWCN 174
           F LK + V  LLY + +  +  +TW N
Sbjct: 33  FLLKQKKVYNLLYRVAQPALANITWYN 59


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 254 FALKGQVVSKLLYPINRELVQYLTWCN 174
           F LK + V  LLY + +  +  +TW N
Sbjct: 33  FLLKQKKVYNLLYRVAQPALANITWYN 59


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 155 GFLDNQHCTMSNIEP--AHDLLDKVILRQLDLLEQKIKCE 268
           GFL+N  CT +   P   H L    ++  LD     IK E
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLAHNDLMSPLDEPAVHIKQE 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,942
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)