Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d05
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    30   1.1  
At1g11720.1 68414.m01345 starch synthase, putative strong simila...    29   3.4  
At3g04450.1 68416.m00472 myb family transcription factor contain...    28   4.5  
At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CS...    28   4.5  
At1g73660.1 68414.m08530 protein kinase family protein contains ...    28   6.0  
At5g38010.1 68418.m04578 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.9  
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co...    27   7.9  

>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +2

Query: 278 ESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDGMTKLK-LYQNK 454
           ES++ + S     S    G +S S T   T S  D S        +E+     K LY   
Sbjct: 429 ESSIASASASGPTSASATGSTSASATGPATGSDNDQSDDDDLSISDEEFAENYKALY--- 485

Query: 455 ENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVECSNIQLQLEENMKNINAL 610
           E+ +  +    VL  + L +  K+ +T L +  E      QLEE  KN+  L
Sbjct: 486 EHCVKVVEENSVLTKEKLKLEAKVVKT-LKFAAEKEEEASQLEETQKNLRML 536


>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 185 SNIEPAHDLLDKVILRQLDLLEQKIKCE 268
           S+IE   D LDK      DLLEQK+K E
Sbjct: 76  SDIEDGSDRLDKKTTDDDDLLEQKLKLE 103


>At3g04450.1 68416.m00472 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 438

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 YHFNFPSTIQSYIGKDFSTINIAPCQI 191
           YH NFP+T+    G++    N  PCQ+
Sbjct: 24  YHNNFPNTLCVSSGQESMNNNPVPCQV 50


>At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CSN
           complex subunit 2 (CSN2) proteasome, COP9-complex and
           eIF3-domain protein; identical to CSN complex subunit 2
           [Arabidopsis thaliana] GI:18056655; identical to cDNA
           CSN complex subunit 2 (CSN2) GI:18056654
          Length = 439

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 500 QNLHMAQKIFQTTLSYVVECSNIQLQLEENMKNIN 604
           QN  + Q+ +QTTL  + E  N +L  + N+K  N
Sbjct: 119 QNTGLLQEFYQTTLKALEEAKNERLWFKTNLKLCN 153


>At1g73660.1 68414.m08530 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 1030

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 194 EPAHDLLDKVILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTES 373
           E   +L D V+LR +D        ++N+++ +    +H++ ++    + S+STTK     
Sbjct: 6   ETLKNLGDGVVLRPVDHCSSIWSMKMNMKNFLKK--LHISPNQSDEAEGSISTTKSNHHK 63

Query: 374 SPDFSAS 394
           S D S+S
Sbjct: 64  SIDVSSS 70


>At5g38010.1 68418.m04578 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 365 TESSPDFSA-SIMCKTIEEDGMTKLKLYQNKENTIVP-LH 478
           TE++  F+  S MCK   +DG+  LK    +E  +VP LH
Sbjct: 139 TENATAFACRSAMCKLYAKDGLAPLKEGCGREEELVPKLH 178


>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
            contains INTERPRO domain, IPR001206, DAG-kinase catalytic
            domain
          Length = 1240

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 515  AQKIFQTTLSYVVECSNIQLQLEENMKNINA 607
            A+KIFQ  +  + E +NIQL+++E    ++A
Sbjct: 923  ARKIFQEEVKPLFEDANIQLEIQETKYQLHA 953


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,078
Number of Sequences: 28952
Number of extensions: 253205
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)