Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d04
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   3.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   3.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.9  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    25   7.9  

>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 566 SVMVKFRSIQASCVFKQDFLGFC*AFEL 483
           SVMVKF   + SCV  + F G    F+L
Sbjct: 209 SVMVKFHITEESCVSTRLFFGLVGLFDL 236


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 357 GTAFTTLHKEVDSNNHGKHATKTTQRWFSTPRAGSSPAESFI*FK--CSAKAQKVLFKNT 530
           G  F  L+++ +  N G+ +    + W++  ++       F+ +K  C+ K+ +      
Sbjct: 364 GDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423

Query: 531 RC 536
           RC
Sbjct: 424 RC 425


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 406 ENTPQKQRSDGSRLQEPGHRQR 471
           ++T + + +D  RL EPG+R+R
Sbjct: 573 DSTEENENTDTVRLYEPGYRER 594


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +2

Query: 35  LYVICWFKLNFLQFSFEHHC-----ANDF*LNSNY 124
           LY++CW + N ++F  E  C     ANDF  + +Y
Sbjct: 341 LYLLCWGEANNIRFCPECLCFIFKLANDFMQSEDY 375


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 17  VTVDGLLYVICWFKLNFLQFSFEHHCA 97
           V V GL YV+ +F L ++    +  CA
Sbjct: 452 VIVGGLAYVVMFFSLRYVNKKRDERCA 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,912
Number of Sequences: 5004
Number of extensions: 39971
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)