Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d04
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1486 + 30470838-30472460                                         30   1.5  
11_01_0684 - 5622728-5623155,5623272-5623434,5623635-5623820,562...    29   2.7  
01_06_0207 + 27534226-27534723                                         29   2.7  
05_04_0261 - 19505647-19506828                                         28   6.1  
06_01_0099 + 824557-825532,826090-826245,826422-828064                 27   8.1  

>06_03_1486 + 30470838-30472460
          Length = 540

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 443 REPSLRCFCGVFSVIIGINFLVQSGERCTIFSPRSRNDELRRKLPLTLAA-QQCSSW 276
           R  + +C   V  +II    L  +G+   +F      ++L R+LPL+LAA ++ ++W
Sbjct: 5   RRHARQCRLVVAGLIIVTTLLFFTGDAPRVFIDAPTQNQLPRRLPLSLAAVREAATW 61


>11_01_0684 -
           5622728-5623155,5623272-5623434,5623635-5623820,
           5623938-5624129
          Length = 322

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 143 VAMCFADVTAKGSDGKTLRNGIMKRANVNN 232
           V + F D  AKG DG  L  G+   A VNN
Sbjct: 54  VRLQFHDCFAKGCDGSVLIKGVGNNAEVNN 83


>01_06_0207 + 27534226-27534723
          Length = 165

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 394 PIITENTPQKQRSDGS-RLQEPGHRQRSHSFNSNAQQ 501
           P I   T  K+ S GS R QE G   R H +N N ++
Sbjct: 93  PSIDGTTTTKKASKGSYRRQEGGRNPRMHEYNKNGEK 129


>05_04_0261 - 19505647-19506828
          Length = 393

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 396 NNHGKHATKTTQRWFSTPRAGSSPAES 476
           N+H  HAT  T R+ S+P A +  AES
Sbjct: 28  NHHHHHATLFTHRYSSSPLARTPEAES 54


>06_01_0099 + 824557-825532,826090-826245,826422-828064
          Length = 924

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 429 ALFLWRVFRDYWNQLPC 379
           +LF WRV  D+W+Q  C
Sbjct: 179 SLFAWRVGSDHWSQCSC 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,727
Number of Sequences: 37544
Number of extensions: 264005
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)