Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d04
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)                     31   0.67 
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               29   2.1  
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   29   2.7  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)         28   4.8  
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   6.3  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_41073| Best HMM Match : GRP (HMM E-Value=2.8)                       27   8.3  

>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
          Length = 406

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 20/82 (24%), Positives = 41/82 (50%)
 Frame = +1

Query: 301 NVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQRSHS 480
           ++    RR  +LRLR E+  Q     T+K     T ++P +Q  DGS+  +   +++   
Sbjct: 249 DIRKEIRRQEALRLRLEEAKQLEDDTTQKP-DRGTTSSPDQQARDGSQEADSRPQRQKSG 307

Query: 481 FNSNAQQKPKKSCLKTQDACID 546
             +++  KP+++   ++   ID
Sbjct: 308 DQTDSSNKPQRTLSASEKRAID 329


>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 511

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 429 QRWFSTPRAGSSPAESFI 482
           QRWF  PR G   AESF+
Sbjct: 253 QRWFRAPREGQESAESFL 270


>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +1

Query: 331 SLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQEP----GHRQRSHSFNSNAQ 498
           SLRL+G+   + S    +KL PI    +P  +  D S L +P    G + RS+   +NA 
Sbjct: 24  SLRLKGKNKPKSSDDSPKKLHPIF---SPVSESPDKSTLPQPPAFVGLKNRSNLCYANAV 80

Query: 499 QKPKKSCLKTQDACIDRNLTMTDSAH 576
            +  ++C    D   D +  MT  A+
Sbjct: 81  IQVLRNCPGFVDFVGDLDKQMTTEAN 106


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 385 KLIPIITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQK 504
           +L PI T  TP  +     R+Q+ GH  R   FN  ++ K
Sbjct: 273 RLSPIKTACTPDDKEEGRDRIQDGGHELRFRVFNGFSRLK 312


>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
          Length = 629

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 349 EKMVQRSPLCTRKLIPIITENTP--QKQRSDGSRLQEPGHRQRSHSFNSNAQQKPK--KS 516
           EK+V  +    +K + + T +TP     RS G  L+   +  +    N N ++      S
Sbjct: 257 EKLVNSALGSMKKGMIVDTRSTPAVMNSRSKGGGLEPESNYPQWKRSNHNIEKHTVLIDS 316

Query: 517 CLKTQDACIDRNLTM 561
             K  +AC D+NL+M
Sbjct: 317 VCKLMEACFDQNLSM 331


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 400 ITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQD 534
           ++ N+ Q+ RS  +     G RQR  SF S  + K   S  KTQ+
Sbjct: 267 VSGNSSQQDRSAHAYRAVRGKRQRKRSFGSLLKLKKSASNKKTQE 311


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/99 (23%), Positives = 40/99 (40%)
 Frame = +1

Query: 238 KMNRNYSRRTAELHDEHCCAANVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTP 417
           + +R+  RR           +++  + RRSSS   R  +   +SPL T+         + 
Sbjct: 333 RRSRSIERRDRRRSRSRSPRSSLGRSRRRSSSRNRRRRRSRSKSPLNTKSQCEKEQRVSR 392

Query: 418 QKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQD 534
            K RS   R      ++R HS + +   K K   L  ++
Sbjct: 393 SKSRSI-ERSYRSSEKERRHSRSEDKSLKEKGKSLSLEE 430


>SB_41073| Best HMM Match : GRP (HMM E-Value=2.8)
          Length = 305

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 327 LIIAAARRKDGTAFTTLHKEVDSNN 401
           +++A AR+     F T H+E+D+NN
Sbjct: 16  ILVAEARKGGNGYFQTTHRELDNNN 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,119
Number of Sequences: 59808
Number of extensions: 310694
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)