Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d04
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    29   3.1  
U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    28   5.5  

>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 232 LKKMNRNYSRRTAELHDEHC--CAANVSGNFR 321
           +KKM   + RR  EL++E C  C  N+SGN R
Sbjct: 334 VKKMEDAWKRRDLELYNEACSWCEKNLSGNQR 365


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 364 RSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQR 471
           RSP  T     ++   TP  +RS    L EPG R+R
Sbjct: 559 RSPARTPATPIVVINQTPSSRRSSQDLLGEPGQRRR 594


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 364 RSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQR 471
           RSP  T     ++   TP  +RS    L EPG R+R
Sbjct: 559 RSPARTPATPIVVINQTPSSRRSSQDLLGEPGQRRR 594


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = +1

Query: 274 LHDEHCCAANVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQE 453
           L+D        +G  + +SS+   GE    R    TRKL  +I    P  + ++  R+  
Sbjct: 123 LYDTATVIPTRNGTHQNASSISACGEFQFLRKRKDTRKLSQMIFGAVPNLKTNESFRIHV 182

Query: 454 PGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLTMTDSA 573
               +      + A  K +K  L    A + RN  + DS+
Sbjct: 183 LEDEETILVSKTFAIPKYRKGALPAAAAAVVRNEALMDSS 222


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = +1

Query: 274 LHDEHCCAANVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQE 453
           L+D        +G  + +SS+   GE    R    TRKL  +I    P  + ++  R+  
Sbjct: 184 LYDTATVIPTRNGTHQNASSISACGEFQFLRKRKDTRKLSQMIFGAVPNLKTNESFRIHV 243

Query: 454 PGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLTMTDSA 573
               +      + A  K +K  L    A + RN  + DS+
Sbjct: 244 LEDEETILVSKTFAIPKYRKGALPAAAAAVVRNEALMDSS 283


>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 443 REPSLRCFCGVFSVIIGINFLVQSGERCT--IFSPRSRNDELRRKLPLTL 300
           R  +L  + GV ++    N L + GE     +F+P  R D +  KLPL +
Sbjct: 132 RSEALSAYIGVATLNDAENHLTRRGEFALYHLFNPNGRLDTITEKLPLMI 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,982
Number of Sequences: 27780
Number of extensions: 232965
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)