Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d04
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    34   0.078
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    29   2.2  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    27   6.8  
At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    27   9.0  
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 33.9 bits (74), Expect = 0.078
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 394  PIITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKP 507
            P++T+N P+K  S+ + L+  G    +HS NSNA + P
Sbjct: 1545 PLVTDNLPEKDTSE-TLLKSVGRNHETHSPNSNAVELP 1581


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +1

Query: 277 HDEHCCAANVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQE 453
           HD  C  A    N RR  SL LR EK         RKL+  +  +    Q ++ S   E
Sbjct: 583 HDRCCSCAVCDTNKRRRRSLLLRREKKQMEKEDNARKLLEQLNSDNGLHQSANNSENHE 641


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 403 TENTPQKQRSDGSRLQEPGHRQRSH--SFNSNAQQKPKKS 516
           T+N   KQRS  SR   P +R++    S +  +  KPK S
Sbjct: 746 TQNNAGKQRSKRSRSAPPFYREKKRFISLSCKSDTKPKNS 785


>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
            similarity to COP1-Interacting Protein 7 (CIP7)
            [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 424  QRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLTMTD 567
            ++S  S + E      + SFNSN   +P  +   T +A   +NL   D
Sbjct: 1161 KKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQD 1208


>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 307 SGNFRRSSSLRLRGEKMVQ--RSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQ 468
           SG FR   S     E +V    S L   ++   I  NT Q   +D + L+EPGH +
Sbjct: 38  SGLFRARPSPSHEAETLVSDDSSGLSNGEVAIRIIGNTEQDAETDTNALREPGHSE 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,337
Number of Sequences: 28952
Number of extensions: 210633
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)