Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c23
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               29   0.86 
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   0.86 
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   29   1.5  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             28   2.6  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_43632| Best HMM Match : EGF (HMM E-Value=0.6)                       27   6.1  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011)                    27   6.1  
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)                   27   6.1  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     26   8.0  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  

>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 359 FFLNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVG 228
           F L  VI+ T+++    D+ +  +L+IP  +W + + +  +  G
Sbjct: 331 FSLGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 353 LNSVIYCTILHKLIVDDFHAC-WLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 183
           ++SV  C  +H + V     C +  + SSLW  F E+     G RC S  +FVT +RL
Sbjct: 314 MSSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 254 LEVCRSSVGPRCDSDVRFVTFQRLCSK 174
           L  C SSV PR D+D R +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 254 LEVCRSSVGPRCDSDVRFVTFQRLCSK 174
           L  C SSV PR D+D R +TF   C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 254 LEVCRSSVGPRCDSDVRFVTFQRLCSK 174
           L  C SSV PR D+D R +TF   C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532


>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 165 LVTCEAPWLRCLSSLCKLNQLASKRSFCY-CSCLL 64
           +V C    L    + C+LN++AS  S+C+ C CL+
Sbjct: 87  IVRCHRGKLELACNSCELNEIAS--SYCFECKCLV 119


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 44   QFI-FENKSKQEQ*QNERLEASWFNLHKLLKHRSQGAS--QVTKAR 172
            QF+ + N++KQ    N RLEA +  L KL KH    A+  +V KA+
Sbjct: 1118 QFVDYFNRAKQNN--NARLEAEFKKLFKLSKHHPSEAAKKRVNKAK 1161


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 FRAEALKRDESHVRVTPWANGRPAH 248
           FR   L   +S VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 15  LSGCGNQENFNLFLRIKVNKNNNKMSAWRQAGLTYIN 125
           L G G    +N  LR++    NN +   +Q G TY++
Sbjct: 215 LHGFGMSVEYNKILRVEAQIENNVLQRMQQNGGTYLS 251


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 296 ACWLTIPSSLWNSFLEVCRSSVGPRC 219
           AC+L IP ++ N  ++ C++ V  +C
Sbjct: 69  ACYLDIPGNMVNEEVQACKAKVFSQC 94


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +3

Query: 51  FLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 209
           F+  + +  + +  + R   +TY N+S+  A+  + +  Q+ R E ++    H
Sbjct: 333 FIANRAHLTSRRAHSSRAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 254 LEVCRSSVGPRCDSDVRFVTFQRLCS 177
           L  C SSV PR D+D R +TF+  C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 83  QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTP 250
           +NER+ A+W  +++ LK  ++   + T  R++ R       SR S  +G + T  P
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRSA-----SRHSIKVGPQETLIP 202


>SB_43632| Best HMM Match : EGF (HMM E-Value=0.6)
          Length = 201

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 156 CEAPWLRCLSSLCKLNQLASKRSFCYCSCLLL 61
           CE+    C SSLC  ++  ++     C CLLL
Sbjct: 105 CESDIDDCQSSLCVNSKAKAREMMARCYCLLL 136


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 FRAEALKRDESHVRVTPWANGRPAH 248
           F A  L   +S VR +PWA  RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856


>SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011)
          Length = 294

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 156 CEAPWLRCLSSLCKLNQLASKRSFCYCSCLLL 61
           CE+    C SSLC  ++  ++     C CLLL
Sbjct: 105 CESDIDDCQSSLCVNSKAKAREMMARCYCLLL 136


>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
          Length = 483

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 FRAEALKRDESHVRVTPWANGRPAH 248
           F A  L   +S VR +PWA  RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 50  IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKAR 172
           ++EN+  Q Q Q ++L+    NL KLL+   +  S + + R
Sbjct: 611 LYENEKTQAQMQVQQLQTETENLRKLLEDERRQKSLLEQTR 651


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 218  HTLGQRTTCTPPESCSKVKKE 280
            H  GQ    TPP+SCS + ++
Sbjct: 1227 HNYGQPPPMTPPDSCSPIPED 1247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,796,772
Number of Sequences: 59808
Number of extensions: 197795
Number of successful extensions: 564
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)