Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c22
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 100 4e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 99 7e-22
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 100 1e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 77 4e-15
At1g34590.1 68414.m04299 hypothetical protein 29 1.2
At3g56790.1 68416.m06316 RNA splicing factor-related contains we... 28 3.5
At5g28430.1 68418.m03453 hypothetical protein 27 6.2
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 6.2
At4g06603.1 68417.m01028 expressed protein 27 6.2
At3g60930.1 68416.m06816 expressed protein 27 6.2
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 100 bits (240), Expect = 4e-22
Identities = 54/100 (54%), Positives = 67/100 (67%)
Frame = +1
Query: 91 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 270
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 271 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 390
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 99 bits (238), Expect = 7e-22
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +1
Query: 91 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 270
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 271 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 390
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 99.5 bits (237), Expect = 1e-21
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +1
Query: 91 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 270
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 271 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 390
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 77.4 bits (182), Expect = 4e-15
Identities = 47/100 (47%), Positives = 61/100 (61%)
Frame = +1
Query: 91 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 270
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 271 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 390
ELLKV+ KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 40 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 180
F+ + ++ AP E A GH++ + A + G+TD+A + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
similarity to U4/U6-associated RNA splicing factor [Homo
sapiens] gi|2853287|gb|AAC09069
Length = 206
Score = 27.9 bits (59), Expect = 3.5
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +1
Query: 82 EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 252
E+A+ HK TK R + + I L L ++K +D+ + ++ Q
Sbjct: 88 ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147
Query: 253 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 381
EK+ L +V+K+K K +++ L ++K K L VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 40 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 180
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.1 bits (57), Expect = 6.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 139 KGITDKAIRIRPA----RLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 306
KG ++ +++R A R++ L +K + + D + V H YE +A E + K +
Sbjct: 1001 KGNENQELKVREASAAKRIEEL-SKMKESLLDKELQTVIHDNYELKAREASALKKIEELS 1059
Query: 307 KFLKRRLGTHIRAKRKREELSN 372
K L+ TH K EE++N
Sbjct: 1060 KLLEEASSTH----EKGEEITN 1077
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 40 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 180
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 40 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 180
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,847,009
Number of Sequences: 28952
Number of extensions: 165273
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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