Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c21
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 3e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 4e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 37 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.003
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.004
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 36 0.004
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.006
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.007
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 34 0.022
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 33 0.039
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 30 0.28
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 30 0.28
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.6
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 3.4
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 6.0
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.0
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 6.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.0
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 7.9
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 7.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +2
Query: 413 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 592
+V+ E +YR + I V G ++P P E +GFP Y+ +K G PT IQ Q
Sbjct: 92 NVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQ 151
Query: 593 GWPIALSGKNFVGIAQTGTGK 655
WP+A+SG++ VGI+ TG+GK
Sbjct: 152 AWPMAMSGRDMVGISATGSGK 172
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +2
Query: 452 RSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVG 631
+ D +I++ G D+P+P + E +G P + LK +P+ IQ P+ L K+ +G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 632 IAQTGTGK 655
IA+TG+GK
Sbjct: 292 IAETGSGK 299
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 416 VKTEQKKEDDDYRSD-NSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 592
+K E D+ R+ + I + G D P P G + + G KPT IQ+Q
Sbjct: 388 LKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQ 447
Query: 593 GWPIALSGKNFVGIAQTGTGK 655
P SG++ +G+A+TG+GK
Sbjct: 448 AIPAITSGRDVIGVAKTGSGK 468
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 458 DNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIA 637
D + V G DI P + + ++ +K+ G T+PT +Q PI SG++ + A
Sbjct: 155 DIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACA 213
Query: 638 QTGTGK 655
QTG+GK
Sbjct: 214 QTGSGK 219
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 554 MQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
++ +PT IQ+ WP L+G++ VGIA+TG+GK
Sbjct: 182 LKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGK 215
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 569 KPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
KPT +QS+ P+AL GK+ V A+TG+GK
Sbjct: 36 KPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +2
Query: 413 SVKTEQKKEDDDYRSDNSITVIGQDIPS--PFVDIEASGFPEYIKTFLKMQGITKPTVIQ 586
S E E++D R S+ + F D++ S E I+ +K G T IQ
Sbjct: 60 SESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLS---ENIQKAIKEMGFETMTEIQ 116
Query: 587 SQGWPIALSGKNFVGIAQTGTGK 655
+ P L+G++ +G A+TG+GK
Sbjct: 117 KRSIPPLLAGRDVLGAAKTGSGK 139
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G PT IQ + P+ L+ ++ +G+AQTG+GK
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +2
Query: 506 DIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+ ++ G + + + +G PT IQ + P+ L G++ VG+A+TG+GK
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G PT IQ + P+AL GK+ VG A TG+GK
Sbjct: 278 GFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +P+ IQ + PIALSG++ + A+ GTGK
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSG--KNFVGIAQTGTGK 655
PE +K M+ KP+ IQ + P+ LS +N +G +Q+GTGK
Sbjct: 123 PELLKGIYSMK-FQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 33.1 bits (72), Expect = 0.039
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +2
Query: 425 EQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPI 604
++K+E+++ NS + F ++ + + K+ LK T IQ Q P
Sbjct: 16 KRKEEEEEIEELNSQIEALSETVDHFAELPLT---QPTKSALKNAHFITLTEIQKQCIPS 72
Query: 605 ALSGKNFVGIAQTGTGK 655
AL G++ +G A+TG+GK
Sbjct: 73 ALKGRDILGAAKTGSGK 89
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 347 SILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNS 466
S L N KG+KLR + +Y VK +Q+K+ D +S N+
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNN 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
PE + + K G +KP IQS P A G + +G A TG+GK
Sbjct: 131 PEMLGSLSKA-GFSKPMPIQSLVIPEASIGFDIIGKADTGSGK 172
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G ++ LK I +PT IQ L G+N +G A+TG+GK
Sbjct: 13 GISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGK 57
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 296 IVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYS-VKTEQKKEDDDYRSDNSIT 472
I+ NV + I PK+ L Q + G+ + + RF+ + EQ+ +
Sbjct: 684 ILNRNVDKSKIDPKLIRKTLPFQNINGSLVSGFVVKRFFEIISKEQEASSQQENIQKAYE 743
Query: 473 VIGQDIPS-PFVDIEASGFPEYIKTFLK 553
+I ++ P+ + + F E+ KTF++
Sbjct: 744 IIEKEFPTIGSAENHIAQFLEFWKTFME 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 386 RELQILR--FYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFP 529
R+L I R F + E + E + YR+ + ++ D+P FV+ S +P
Sbjct: 697 RQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYP 746
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 310 CISHSHYSQGSIFYIAQSNIKRYKTTRATNLKILFC 417
CIS H FY + ++Y+++ A I+ C
Sbjct: 334 CISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILC 369
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 312 YFTLTLFPRFNILYCTIKY*KVQNY 386
YF L FN YC +Y V NY
Sbjct: 461 YFFLLSHEMFNPFYCLFEYSSVDNY 485
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 249 Y*NERSCPNYYLTNNK**KQMYFTLTLF 332
Y N SCPN+Y ++K K+ Y LT+F
Sbjct: 14 YQNLCSCPNHYAQHSK-NKRNYHQLTIF 40
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +2
Query: 365 ILKGTKLRELQILR-----FYSVKTEQKKEDDDYRSDN 463
ILK ++ +Q LR YSV TE + D RSDN
Sbjct: 234 ILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDN 271
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -1
Query: 449 NHHL-PFSAQFLQNKILRF 396
N HL PFS FL+N ++RF
Sbjct: 85 NQHLFPFSISFLKNDVVRF 103
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -3
Query: 174 EEV*IRIDKNTFPCINMYRKRLNSSVLLYLYGTYAIKPLVSNL 46
E++ ++++ NT+ ++++ ++ S L L T AI +SNL
Sbjct: 23 EKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITEYLSNL 65
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 220 ENGFKCAHKVIKTKGVVQIITLQTTNSRN 306
+NG K K+++ KG I ++TT N
Sbjct: 134 DNGIKALEKIMRQKGRFDNIVIETTGIAN 162
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G P+ +QS+ G++ + AQ+GTGK
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 386 RELQILRFYSVKTEQKKEDDDYRSD 460
R + +RF S E +EDDDY S+
Sbjct: 3 RRARSIRFSSDDNEDNEEDDDYYSN 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,745
Number of Sequences: 5004
Number of extensions: 62736
Number of successful extensions: 207
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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