Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c21
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 62 4e-10
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 50 2e-06
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 42 3e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 6e-04
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 39 0.004
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.009
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.009
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 37 0.012
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 34 0.11
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 34 0.11
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 33 0.15
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 33 0.15
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 31 0.60
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 1.0
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 1.0
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 1.0
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 1.0
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 30 1.8
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 2.4
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 29 2.4
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 2.4
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 29 2.4
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.2
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.2
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 3.2
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 29 3.2
Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein. 29 4.2
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 29 4.2
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 4.2
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 28 7.4
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.4
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 28 7.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.4
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = +2
Query: 413 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 592
+V ++ E D + S N +T+ G+ +P P + + P I L + KPTVIQS
Sbjct: 100 AVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSI 158
Query: 593 GWPIALSGKNFVGIAQTGTGK 655
WPIA+SG++ + IA+TG+GK
Sbjct: 159 SWPIAMSGRDIISIAKTGSGK 179
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 362 QILKGTKLRELQILRFYSVKTEQKKEDDDY---RSDNSITVIGQDIPSPFVDIEASGFPE 532
++ KG K E + + +++ +DY R I+ G IP P FP+
Sbjct: 139 ELTKGEKYEEPIVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPK 198
Query: 533 YIKTFL-KMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+ F+ K +GI PT IQ QG P+ALSG++ +GIA TG+GK
Sbjct: 199 SLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGK 240
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +2
Query: 404 RFYSVKTEQKKEDDD---YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKP 574
R + +K + D D +R D +I++ G +P P + E +GFP+ + +K G +P
Sbjct: 265 RHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEP 324
Query: 575 TVIQSQGWPIALSGKNFVGIAQTGTGK 655
T IQ Q PI L ++ +G+A+TG+GK
Sbjct: 325 TPIQRQAIPIGLQNRDVIGVAETGSGK 351
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 416 VKTEQKKEDDDYRSD-NSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 592
++ K E YR + +SITV G D P P G + LK +KPT IQ+Q
Sbjct: 274 IRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQ 333
Query: 593 GWPIALSGKNFVGIAQTGTGK 655
P +SG++ +GIA+TG+GK
Sbjct: 334 AIPSIMSGRDVIGIAKTGSGK 354
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 488 IPSPFVDIE-ASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
IP P E A G I ++ G KP+ IQSQ WP+ LSG++ +G++QTG+GK
Sbjct: 78 IPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGK 134
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 467 ITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTG 646
+ G D+P P E+I+ +K G +PT +Q P G++ + AQTG
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 647 TGK 655
+GK
Sbjct: 214 SGK 216
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 467 ITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTG 646
+ V G +P+ +GF + + G +KPT +Q P L+ ++ + AQTG
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 186
Query: 647 TGK 655
+GK
Sbjct: 187 SGK 189
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 467 ITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTG 646
+ V G +P+ +GF + + G +KPT +Q P L+ ++ + AQTG
Sbjct: 111 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 170
Query: 647 TGK 655
+GK
Sbjct: 171 SGK 173
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 467 ITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTG 646
+ V G +P+ +GF + + G +KPT +Q P L+ ++ + AQTG
Sbjct: 108 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 167
Query: 647 TGK 655
+GK
Sbjct: 168 SGK 170
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 464 SITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQT 643
++ V G P P F + + ++ +PT IQ+ P ALSG++ +GIA+T
Sbjct: 252 NLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKT 311
Query: 644 GTGK 655
G+GK
Sbjct: 312 GSGK 315
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 38.7 bits (86), Expect = 0.004
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +2
Query: 362 QILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSPF-VDIEASGFPEYI 538
Q L G + R+ + S K+++ +E++D+ S + G+ + + V E I
Sbjct: 103 QQLGGKETRDTVREKRKSGKSKKSQENEDFFS---ALIDGKSLDTSVNVSFEQMNLSRQI 159
Query: 539 KTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G + PT IQ P+AL+GK+ A TGTGK
Sbjct: 160 LKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGK 198
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 458 DNSITVIGQDIP---SPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
D S+ ++ + P P S P+ ++ ++ G T+ T IQ P+ GK+ +
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
Query: 629 GIAQTGTGK 655
AQTG+GK
Sbjct: 340 ACAQTGSGK 348
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 458 DNSITVIGQDIP---SPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
D S+ ++ + P P S P+ ++ ++ G T+ T IQ P+ GK+ +
Sbjct: 280 DASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
Query: 629 GIAQTGTGK 655
AQTG+GK
Sbjct: 340 ACAQTGSGK 348
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ P AL GK+ +G+A+TG+GK
Sbjct: 63 GWMKPSKIQQAALPHALQGKDVIGLAETGSGK 94
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 425 EQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPI 604
E KK++DD + + + S + G E + + G KP+ IQ + P
Sbjct: 3 ENKKKNDDMAT---VEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPA 59
Query: 605 ALSGKNFVGIAQTGTGK 655
L ++ + AQ+GTGK
Sbjct: 60 ILKARDVIAQAQSGTGK 76
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 548 LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
LK TKPT IQ +L+G + VG A+TG+GK
Sbjct: 91 LKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGK 126
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G + ++ +G +PT IQ + P + GK+ V +++TG+GK
Sbjct: 30 GLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGK 74
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G + ++ +G +PT IQ + P + GK+ V +++TG+GK
Sbjct: 30 GLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGK 74
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ + P L ++ + AQ+GTGK
Sbjct: 45 GFEKPSAIQQRAVPAILKARDVIAQAQSGTGK 76
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGK-NFVGIAQTGTGK 655
P + ++ G ++PT IQS P A+ + + +G A+TG+GK
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGK 206
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 530 EYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
E +K + G TK T IQ P+ G + + AQTG+GK
Sbjct: 561 ETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGK 602
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 530 EYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
E +K + G TK T IQ P+ G + + AQTG+GK
Sbjct: 561 ETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGK 602
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 530 EYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
E +K + G TK T IQ P+ G + + AQTG+GK
Sbjct: 561 ETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGK 602
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 566 TKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
T PT +QS+ P L G + + A+TG+GK
Sbjct: 23 TLPTAVQSEAIPAILGGADALIAAETGSGK 52
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ + +GK+ + AQ+GTGK
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGK 79
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +2
Query: 347 SILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGF 526
S+LH+ +L+ R ++ F+S+ KE Y +++ I+ + Q S + + +
Sbjct: 442 SLLHHPVLQEPTARSVECFYFHSMLASPMKEIIHYHANDKISDVLQRFISLYHTSQEAED 501
Query: 527 PEYIKTFLK 553
+YI F K
Sbjct: 502 KKYIMMFTK 510
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ + +GK+ + AQ+GTGK
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGK 79
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +I L+ I T +Q+ P L G + +G A+TGTGK
Sbjct: 95 GVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGK 139
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +I L+ I T +Q+ P L G + +G A+TGTGK
Sbjct: 95 GVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGK 139
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +K T IQ P+ G + + AQTG+GK
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGK 391
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +K T IQ P+ G + + AQTG+GK
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGK 391
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +K T IQ P+ G + + AQTG+GK
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGK 391
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G KP+ IQ +AL+G++ + A+ GTGK
Sbjct: 61 KGWEKPSPIQEASIGVALTGQDILARAKNGTGK 93
>Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical
protein C23H4.1 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 380 KLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEY 535
K+ + +L++Y + EQ K+DD Y + +P+ F + E E+
Sbjct: 90 KINKEDLLKYYGKEVEQYKDDDSYMEYLIEYMKSHPVPAQFPNFEQEAEQEH 141
>AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 380 KLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEY 535
K+ + +L++Y + EQ K+DD Y + +P+ F + E E+
Sbjct: 90 KINKEDLLKYYGKEVEQYKDDDSYMEYLIEYMKSHPVPAQFPNFEQEAEQEH 141
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +2
Query: 416 VKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQG 595
VK+E KE+++ +D ++T+ PS DI+ P + ++ Q IT P ++
Sbjct: 34 VKSEVVKEEENDDADRTLTM-----PSTSQDIQPESSPAHGRSAPSSQEITSPPTVRRVA 88
Query: 596 WPIALSGKNF 625
P+ + + +
Sbjct: 89 TPLEAAEQEY 98
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G E I + G K +Q +AL KN +G A+TG+GK
Sbjct: 95 GLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGK 139
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 677 AGKRKANVFRYLFVLYPQSFYHSKLLAIPVTVSQLVL*YLASSEMFLYIQEIHW 516
A +KAN+FRY ++ Y S + + L+ + + Y +E F E W
Sbjct: 663 AATKKANLFRYQYLPYLFSLHFTASLSGATVIRPVFFEYPTDAETFNLGYEFMW 716
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
P+ + LK + +PT IQ + + G + V A TG+GK
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGK 786
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 425 EQKKEDDDYRSDNSITVIGQDIP-SPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWP 601
E ++E ++S T + + + + F +E +K + G T T IQ++
Sbjct: 42 EVEEEQKHQTEESSETKVSEFLTKTTFASLEGKVNANLLKAVQGL-GFTTMTEIQAKSID 100
Query: 602 IALSGKNFVGIAQTGTGK 655
L GK+ + A+TG+GK
Sbjct: 101 PLLEGKDVLASAKTGSGK 118
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
P+ + LK + +PT IQ + + G + V A TG+GK
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGK 786
>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
ZK593.4 protein.
Length = 1477
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 290 QQIVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYSVKTEQKK 436
Q + ET+ F+ I V+Y I+H +K + +L + +KT+ +K
Sbjct: 1022 QSLRETDWFYEKYINMVRYEIIHVAKIKSMIDAAIPVLSEFDLKTQLQK 1070
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,449
Number of Sequences: 27780
Number of extensions: 350808
Number of successful extensions: 931
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -