Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c21
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   2e-09
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.52 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.52 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 458 DN-SITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGI 634
           DN  + V G ++P P    EA+G    +   +K  G  KPT +Q    PI ++G++ +  
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 635 AQTGTGK 655
           AQTG+GK
Sbjct: 240 AQTGSGK 246


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 565 DTLHLQKCFYIFRKSTGFYVNKRTG 491
           D ++LQK FY+F +   F V  R G
Sbjct: 531 DMVYLQKYFYLFMEMDRFAVTLRPG 555


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 565 DTLHLQKCFYIFRKSTGFYVNKRTG 491
           D ++LQK FY+F +   F V  R G
Sbjct: 531 DMVYLQKYFYLFMEMDRFAVTLRPG 555


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 500 FVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGI 634
           +VD E    P+Y +  ++ +G       QS G  ++ +G  F+G+
Sbjct: 280 YVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLFLGL 324


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 296 IVETNVFHTHIIPKVQY-SILHNQILKGTKLRELQIL-RFYSVKTEQKKEDDDYRSDNSI 469
           +V  +V  T  +  V + S + +++ +  ++  +Q+L RF  +  E+ K+D+D   +  +
Sbjct: 309 LVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLI--ERPKKDEDEEEEEEV 366

Query: 470 TVIGQD 487
            V+G++
Sbjct: 367 VVVGRN 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,342
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)