Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c21
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 84 7e-17
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 76 3e-14
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 76 3e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 4e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 5e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 5e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 5e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 67 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 66 2e-11
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 64 9e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 55 4e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 7e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 47 1e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 45 6e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 45 6e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 2e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 42 4e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 41 0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 40 0.002
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 39 0.003
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 37 0.015
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.034
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.034
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 35 0.045
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 35 0.045
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.045
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.045
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 35 0.045
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.045
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.060
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.060
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 34 0.079
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 34 0.079
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 34 0.10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.14
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.14
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 33 0.18
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 33 0.24
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.24
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.24
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 32 0.32
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 32 0.42
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 31 0.56
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 31 0.56
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.73
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 30 1.7
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.7
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 30 1.7
At1g78230.1 68414.m09116 leucine-rich repeat family protein 29 2.2
At3g55090.1 68416.m06118 ABC transporter family protein ATP-bind... 29 3.0
At1g36095.1 68414.m04487 hypothetical protein contains Pfam doma... 29 3.0
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 29 3.9
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ... 29 3.9
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 29 3.9
At3g47400.1 68416.m05154 pectinesterase family protein similar t... 28 5.2
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 6.8
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 27 9.0
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 9.0
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 9.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +2
Query: 437 EDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSG 616
E ++YR ITV G+DIP P GFP+Y+ +K G T+PT IQSQGWP+A+ G
Sbjct: 77 EVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKG 136
Query: 617 KNFVGIAQTGTGK 655
++ +GIA+TG+GK
Sbjct: 137 RDLIGIAETGSGK 149
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/69 (44%), Positives = 48/69 (69%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
YR++ I+V G+D+P P + + FP+ I + G T+PT IQ+QGWP+AL G++ +
Sbjct: 147 YRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Query: 629 GIAQTGTGK 655
GIA+TG+GK
Sbjct: 207 GIAETGSGK 215
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/69 (44%), Positives = 48/69 (69%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
YR++ I+V G+D+P P + + FP+ I + G T+PT IQ+QGWP+AL G++ +
Sbjct: 147 YRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Query: 629 GIAQTGTGK 655
GIA+TG+GK
Sbjct: 207 GIAETGSGK 215
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
YR + +T G++IP+P++ E+SG P I L G PT IQ+Q WPIAL ++ V
Sbjct: 417 YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIV 476
Query: 629 GIAQTGTGK 655
IA+TG+GK
Sbjct: 477 AIAKTGSGK 485
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
Y + ITV G +P P + EA+GFP + + G + PT IQ+Q WPIA+ G++ V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 629 GIAQTGTGK 655
IA+TG+GK
Sbjct: 200 AIAKTGSGK 208
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
Y + ITV G +P P + EA+GFP + + G + PT IQ+Q WPIA+ G++ V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 629 GIAQTGTGK 655
IA+TG+GK
Sbjct: 200 AIAKTGSGK 208
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
Y + ITV G +P P + EA+GFP + + G + PT IQ+Q WPIA+ G++ V
Sbjct: 140 YSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
Query: 629 GIAQTGTGK 655
IA+TG+GK
Sbjct: 200 AIAKTGSGK 208
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = +2
Query: 413 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 592
S+ ++E DYR I V G D+ P E GF I + +K Q KPT IQ Q
Sbjct: 198 SISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQ 257
Query: 593 GWPIALSGKNFVGIAQTGTGK 655
PI LSG++ +GIA+TG+GK
Sbjct: 258 ALPIVLSGRDVIGIAKTGSGK 278
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/80 (43%), Positives = 46/80 (57%)
Frame = +2
Query: 416 VKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQG 595
V+ K+ D R ITV G+DIP P + FP + LK +GI PT IQ QG
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 596 WPIALSGKNFVGIAQTGTGK 655
P+ LSG++ +GIA TG+GK
Sbjct: 128 LPVVLSGRDMIGIAFTGSGK 147
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = +2
Query: 416 VKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQG 595
++ K+ D R I V G DIP P + + FP + LK +GI +PT IQ QG
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 596 WPIALSGKNFVGIAQTGTGK 655
P+ L+G++ +GIA TG+GK
Sbjct: 177 LPVILAGRDMIGIAFTGSGK 196
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +2
Query: 431 KKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIAL 610
++E + YR + + V G+D+P P +G I +K KP IQ+Q PI +
Sbjct: 505 QEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIM 564
Query: 611 SGKNFVGIAQTGTGK 655
SG++ +G+A+TG+GK
Sbjct: 565 SGRDCIGVAKTGSGK 579
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFV 628
YR + + V G+D+P P +G I LK KP IQ+Q PI +SG++ +
Sbjct: 378 YRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCI 437
Query: 629 GIAQTGTGK 655
G+A+TG+GK
Sbjct: 438 GVAKTGSGK 446
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +2
Query: 389 ELQILRFYSVKTEQKKEDDD---YRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQ 559
++++ R +S K ++ + D +R D +I+ G IP P E S + ++
Sbjct: 272 DMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERA 331
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ P+ L ++ +GIA+TG+GK
Sbjct: 332 GYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 428 QKKEDDDYRSDNSITVIGQDIPSP---FVDIEAS-GFPEYIKTFLKMQGITKPTVIQSQG 595
Q + D R SI V G +IP P F ++ + G YI L G +PT IQ Q
Sbjct: 112 QMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQA 171
Query: 596 WPIALSGKNFVGIAQTGTGK 655
PI LSG+ A TG+GK
Sbjct: 172 IPILLSGRECFACAPTGSGK 191
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 479 GQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G +P P + + G P + L+ G PT IQ Q P AL+GK+ + A TG+GK
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGK 160
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 377 TKLRELQILRFYSVKTEQKKED-DDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLK 553
TKL+ ++ + V +K E+ ++ R+D ++ +P E G + L
Sbjct: 4 TKLKPVEDVNSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALT 62
Query: 554 MQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+GI KPT+IQ P L GK+ V A+TG+GK
Sbjct: 63 KKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGK 96
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G + P+ IQ+Q WPIA+ ++ V IA+TG+GK
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGK 279
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 449 YRSDNSITVIGQDIPSPFVDIEASGFP 529
Y + ITV G +P P + EA+G P
Sbjct: 143 YCRKHEITVSGGQVPPPLMSFEATGLP 169
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 518 SGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
S PE + K KP+ IQS WP L G++ +GIA+TG+GK
Sbjct: 121 SNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGK 164
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 506 DIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+ E G E+ K G+ KPT +Q+ P L+G++ +G+AQTG+GK
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGK 108
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 446 DYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNF 625
D D I G ++P P E + ++ KPT +Q PI L G++
Sbjct: 140 DAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDL 199
Query: 626 VGIAQTGTGK 655
+ AQTG+GK
Sbjct: 200 MACAQTGSGK 209
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G P+ IQ++ P AL GK+ +G+AQTG+GK
Sbjct: 28 GWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 458 DNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIA 637
D I G ++P P E + ++ KPT +Q PI +G++ + A
Sbjct: 131 DIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACA 190
Query: 638 QTGTGK 655
QTG+GK
Sbjct: 191 QTGSGK 196
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G PT++Q+Q P+ LSG++ + A TGTGK
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGK 80
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.5 bits (78), Expect = 0.034
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 548 LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+K +G PT IQ + P+ LSG + V +A+TG+GK
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGK 78
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G KP+ IQ + PIAL+G + + A+ GTGK
Sbjct: 142 KGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G KP+ IQ + PIAL+G + + A+ GTGK
Sbjct: 142 KGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 416 VKTEQKKE--DDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQS 589
V TEQ+ + D D + G D+P P + + ++ +PT +Q
Sbjct: 120 VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQR 179
Query: 590 QGWPIALSGKNFVGIAQTGTGK 655
PI L+ ++ + AQTG+GK
Sbjct: 180 HAIPILLAERDLMACAQTGSGK 201
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 416 VKTEQKKE--DDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQS 589
V TEQ+ + D D + G D+P P + + ++ +PT +Q
Sbjct: 120 VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQR 179
Query: 590 QGWPIALSGKNFVGIAQTGTGK 655
PI L+ ++ + AQTG+GK
Sbjct: 180 HAIPILLAERDLMACAQTGSGK 201
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 416 VKTEQKKED--DDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQS 589
++ E++K + +D + +I ++G+ I + V ++ E +K G T IQ+
Sbjct: 59 IEEEEEKVEAMEDGEDEKNIVIVGKGIMTN-VTFDSLDLSEQTSIAIKEMGFQYMTQIQA 117
Query: 590 QGWPIALSGKNFVGIAQTGTGK 655
L GK+ +G A+TG+GK
Sbjct: 118 GSIQPLLEGKDVLGAARTGSGK 139
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G KP+ IQ + PIAL+G + + A+ GTGK
Sbjct: 172 KGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G +P+ IQ + PIAL+G++ + A+ GTGK
Sbjct: 149 KGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 557 QGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+G +P+ IQ + PIAL+G++ + A+ GTGK
Sbjct: 149 KGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 34.3 bits (75), Expect = 0.079
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +2
Query: 434 KEDDDYRSDNSITVIGQDIPSPFVDIEASGF------PEYIKTFLKMQGITKPTVIQSQG 595
+E+D+ D+ V G+ + +V I +SGF PE ++ + G P+ +Q +
Sbjct: 18 EEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVD-SGFEHPSEVQHEC 76
Query: 596 WPIALSGKNFVGIAQTGTGK 655
P A+ G + + A++G GK
Sbjct: 77 IPQAILGMDVICQAKSGMGK 96
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 34.3 bits (75), Expect = 0.079
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +2
Query: 434 KEDDDYRSDNSITVIGQDIPSPFVDIEASGF------PEYIKTFLKMQGITKPTVIQSQG 595
+E+D+ D+ V G+ + +V I +SGF PE ++ + G P+ +Q +
Sbjct: 18 EEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVD-SGFEHPSEVQHEC 76
Query: 596 WPIALSGKNFVGIAQTGTGK 655
P A+ G + + A++G GK
Sbjct: 77 IPQAILGMDVICQAKSGMGK 96
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
PE +K LK +GI K IQ A+ G++ +G A+TGTGK
Sbjct: 125 PEIVKA-LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 166
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.5 bits (73), Expect = 0.14
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Frame = +2
Query: 308 NVFHTHIIPKVQY----SILHNQILKGTKLRELQILRFYS--VKTEQKKEDDDYRSDNSI 469
NV H PK+ Y S L T R S + + E NS+
Sbjct: 7 NVPHLAFFPKISYASVFSTLKPSFFHSTSTRRALKSSPSSRIINLQAVAETSSEIESNSV 66
Query: 470 TVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGT 649
T +P I PE+I ++ G PT IQ + P +G++ + AQTG+
Sbjct: 67 TET--TVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGS 124
Query: 650 GK 655
GK
Sbjct: 125 GK 126
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
V ++ G + + L+ G +P++ Q+ P LSGK+ + A+TG+GK
Sbjct: 80 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGK 130
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 548 LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+K G TV+Q PI L GK+ + A+TGTGK
Sbjct: 397 IKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGK 432
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 548 LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+K G TV+Q PI L GK+ + A+TGTGK
Sbjct: 69 IKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGK 104
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
PE +K L +GI K IQ A+ G++ +G A+TGTGK
Sbjct: 113 PEIVKA-LSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 154
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 512 EASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
E G P+ + L+ +G + PT +QS P + G + V + TG+GK
Sbjct: 113 EELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGK 160
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KPT IQ+ P+AL+G++ A TG+GK
Sbjct: 186 GYKKPTPIQAACIPLALTGRDLCASAITGSGK 217
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/78 (23%), Positives = 35/78 (44%)
Frame = +2
Query: 422 TEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWP 601
TE K E+++ + + E+ + +K G + T IQ++ P
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIP 186
Query: 602 IALSGKNFVGIAQTGTGK 655
+ G++ +G A+TG+GK
Sbjct: 187 PLMMGEDVLGAARTGSGK 204
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G TV+Q P+ L GK+ + A+TGTGK
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGK 130
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 458 DNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIA 637
D+ + D P G E + + G KP+ IQ + L G++ + A
Sbjct: 20 DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA 79
Query: 638 QTGTGK 655
Q+GTGK
Sbjct: 80 QSGTGK 85
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 437 EDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSG 616
+ D+Y D + D I P+ ++ L+ +GIT IQ AL G
Sbjct: 81 DHDEYDLDGDNNNVEADDGEELA-ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQG 139
Query: 617 KNFVGIAQTGTGK 655
++ + A+TGTGK
Sbjct: 140 RDIIARAKTGTGK 152
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 575 TVIQSQGWPIALSGKNFVGIAQTGTGK 655
T +QS P AL G++ +G A+TG+GK
Sbjct: 95 TDVQSAAIPHALCGRDILGAARTGSGK 121
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 512 EASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+A G E + + G KP+ IQ +G G + + AQ+GTGK
Sbjct: 42 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 512 EASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
+A G E + + G KP+ IQ +G G + + AQ+GTGK
Sbjct: 42 DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At1g78230.1 68414.m09116 leucine-rich repeat family protein
Length = 676
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 565 DTLHLQKCFYIFRKSTGFYVNKRTGYILTNNSNAIITSVIIIFLF 431
D ++KCF FR+ FY++ R G + T+N +I+ + I+ F
Sbjct: 59 DCGRIKKCFLFFRRRFFFYIH-RFGALATSNRLRLISKMKILPCF 102
>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 720
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 538 YIFRKSTGFYVNKRTGYILTNNSNAIITSVIIIFLFL 428
YIF + T + +R+ Y+L S+AI+T +IFL L
Sbjct: 492 YIFMRETAYNAYRRSSYVL---SHAIVTFPSLIFLSL 525
>At1g36095.1 68414.m04487 hypothetical protein contains Pfam domain,
PF04937: Protein of unknown function (DUF 659)
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 639 CAIPTKFLPLKAIGHPCDCITVGFVIPCIFRNVFIYSGNPLASMSTK 499
CA +L L+ IG + TV + CIF+N +IY L +M K
Sbjct: 188 CAAHCIYLMLEDIGKISEVKTV--ITQCIFKNDYIYGHTSLVNMMRK 232
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 326 IIPKVQYSILHNQILKG---TKLRELQILRFYSVKTEQKKEDDDYRS 457
+I +QYS L N++LKG + + +++++ + KTE + RS
Sbjct: 475 LINSIQYSDLANEVLKGRGKVPVADYKVVQYVNDKTEDLSQSSSKRS 521
>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
like protein identical to SP|Q9S7R5 TWIN SISTER of FT
protein (TFL1 like protein) {Arabidopsis thaliana};
contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 335 KVQYSILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSP 499
KV Y H ++ G LR Q+L K + DD+R+ ++ ++ D+PSP
Sbjct: 29 KVTYG--HREVTNGLDLRPSQVLN----KPIVEIGGDDFRNFYTLVMVDPDVPSP 77
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 560 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G KP+ IQ + L G++ + AQ+GTGK
Sbjct: 41 GYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
>At3g47400.1 68416.m05154 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Vitis vinifera
GI:15081598, Lycopersicon esculentum SP|Q43143
SP|P14280; contains Pfam profile PF01095 pectinesterase
Length = 594
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 577 SWFCD-TLHLQKCFYIFRKSTGFYVNKR 497
+W+C+ T H + C Y FRKS+ +N R
Sbjct: 85 TWWCNKTPHAETCNYYFRKSSQNNINLR 112
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 527 PEYIKTFLKMQGITKPTVIQSQGWPIAL-SGKNFVGIAQTGTGK 655
P +K+ ++ +PT IQ + +A GK+ +G A+TG+GK
Sbjct: 199 PLLMKSIYRLD-FKEPTKIQKACFNVAAYQGKDVIGAAETGSGK 241
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 521 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
G E + LK Q +P IQ+ + + GK+ + Q+G+GK
Sbjct: 380 GCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGK 424
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 548 LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGK 655
L GI K T +Q L GK+ + A+TGTGK
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGK 425
>At1g76780.1 68414.m08935 expressed protein ; expression supported
by MPSS
Length = 1871
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 368 LKGTKLRELQILR-FYSVKTEQKKEDDDYRSDNSITVIGQDIPS 496
+KGT ++EL R Y + E+KK+DD R + I Q++ S
Sbjct: 762 IKGTTIKELVENRGIYRNEHEEKKKDDANRPEKITGTIKQELVS 805
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,119
Number of Sequences: 28952
Number of extensions: 295556
Number of successful extensions: 717
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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