Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c20
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 29 0.25
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 2.4
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 2.4
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 3.1
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 3.1
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 4.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 5.5
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 5.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 24 7.2
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 9.6
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.25
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 15 SIVYGYFTLLSGCGNQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKV 176
SI+ Y++LLS E + + + N N +SAW G Y+ N A +
Sbjct: 342 SIIGNYYSLLS---EHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAI 392
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 180 EAPWLRCLSSLCKLNQLASKRSFC 109
+AP L LS++C + + KR FC
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFC 990
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 371 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 195
+++ T +KL D H L IP S F+E + V CD D + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 120 RSFCYCSC 97
RSFCYCSC
Sbjct: 158 RSFCYCSC 165
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 239 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 352
QSH L + TP + ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 227 RISRQSHTLGQRTTCTPPESCSKVKK 304
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 220 NVTNLTSESHLGPTDDLHTSRKLFQS 297
+V+ L+S SHL PT +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 171 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 278
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 317 WLTIPSSLWNSFLEVCR 267
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 386 FFLNSVIYCTILHKLIVDDF 327
F+LN V C I+H+++ + F
Sbjct: 392 FWLNQVELCKIIHRMLTEVF 411
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 220 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 309
++TNLT D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,896
Number of Sequences: 5004
Number of extensions: 29649
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -