Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c20
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri... 64 2e-11
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 29 1.1
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 27 4.4
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 27 4.4
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 4.4
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 27 4.4
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 27 4.4
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 4.4
At3g15380.1 68416.m01950 choline transporter-related contains we... 26 7.6
At1g52080.1 68414.m05875 actin binding protein family contains P... 26 7.6
>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
identical to ATP synthase epsilon chain, mitochondrial
SP:Q96253 from [Arabidopsis thaliana]
Length = 70
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = +3
Query: 102 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 269
+N + WR AG+TYI+YSNI A ++R LK+ +AEAL R++ H ++ WA+G+P
Sbjct: 3 SNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 269 CTPPESCSKVKKE*LTNMHENHQLLIY 349
C PP SCSK+ + +T + HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 293 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 210
WNS +C+S VG C SD V RL
Sbjct: 67 WNSTNHICKSWVGVTCTSDGTSVHALRL 94
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 110 QNERLEASWFNLHKLLKH-RSQGASQV 187
QN W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 57 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 224
N+E NLFL +++++ R T+ N A + L QEF + LKR
Sbjct: 536 NEEALNLFLELQLSRE-------RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 222 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 121
+ +PLL I + C + + S +CK+ LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 297 TLEQLSGGVQVVRWP 253
TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 297 TLEQLSGGVQVVRWP 253
TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225
>At3g15380.1 68416.m01950 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 700
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 102 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 224
+N+ + W+Q G I I K +RRS+ RA LKR
Sbjct: 193 SNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNS--RASVLKR 231
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 77 IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQV 187
+F K K+ Q +NE+L+A F K+L SQV
Sbjct: 191 VFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQV 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,651
Number of Sequences: 28952
Number of extensions: 151732
Number of successful extensions: 430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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