Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c17
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               37   0.012
SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)                  27   9.7  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
 Frame = +2

Query: 260 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 436
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 437 TDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQ-------EGQTNTPS 595
              I+L + ++ K  + +K  +   +G ++     +  +H + A+       E   +  S
Sbjct: 86  CPHIDLGE-NVSKLKDFSKNFNPENKGYVIGNLPELAMSHNKFARPEPKLLPEKTNSISS 144

Query: 596 AEDPVNHHFISFV 634
           A      HF+S+V
Sbjct: 145 ARALEAFHFVSYV 157


>SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 118 HFSHSNCGVDEGD*SIKW*QLDKSNYIFKIVERQTSNK 5
           HF   N  +D G   IKW Q  K+N  + +++R   +K
Sbjct: 175 HFLKYNFDLDNGSVDIKWMQGAKTNICYNVLDRNVHDK 212


>SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)
          Length = 273

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 560 ELAQEGQTNTPSAEDPVNHHFISFVQ 637
           ELA+E ++   + E P +HH ++  Q
Sbjct: 220 ELAKEAESGVNNTETPTSHHLVALAQ 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,994,582
Number of Sequences: 59808
Number of extensions: 368218
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)