Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c17
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 115 3e-26
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 111 3e-25
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 109 1e-24
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.40
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.40
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 30 1.6
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 2.8
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 2.8
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 2.8
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 4.9
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 4.9
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 4.9
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC006641-1|AAF39824.2| 376|Caenorhabditis elegans Hypothetical ... 27 8.5
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 115 bits (276), Expect = 3e-26
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +2
Query: 140 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 319
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 320 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 493
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
Query: 494 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFV 634
++ R LL + AH+E A+EG+T D V++HFI++V
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYV 172
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 111 bits (268), Expect = 3e-25
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Frame = +2
Query: 140 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 319
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 320 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 493
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
Query: 494 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFV 634
+ R LL + AHKE A+EG+T P + V +HFI++V
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYV 171
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 109 bits (263), Expect = 1e-24
Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 316
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 317 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 490
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 491 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFV 634
K + R L + + H A +GQT PS + V HHFI FV
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFV 161
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = +2
Query: 140 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 319
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 320 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 499
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 500 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFV 634
D RG L SE I H +++ + + E N+HF+++V
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYV 163
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 452 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 598
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 452 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 598
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 452 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 598
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 425 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 604
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 605 PVNHHFISFV 634
+ ++ +V
Sbjct: 193 AKDQGYVDYV 202
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 293 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 460
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 461 --GHMQKFLNEA-KGLDATARGKLLEK 532
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 293 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 460
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 461 --GHMQKFLNEA-KGLDATARGKLLEK 532
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 293 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 460
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 461 --GHMQKFLNEA-KGLDATARGKLLEK 532
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 391
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 392 NACGTIALVHSVANNTDIIELSDGH 466
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 391
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 392 NACGTIALVHSVANNTDIIELSDGH 466
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 391
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 392 NACGTIALVHSVANNTDIIELSDGH 466
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 110 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 238
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 162 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 110 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 238
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 187 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 110 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 238
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 571 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 356 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 496
SGN QNIS + +AL A D + + + LN+ +G
Sbjct: 46 SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92
>AC006641-1|AAF39824.2| 376|Caenorhabditis elegans Hypothetical
protein F45D11.10 protein.
Length = 376
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 169 LVQDIGIGFKRD*SFGRHFSHSNCGVDEGD*SIKW*QLDKSNYIFKIVERQ 17
L++ I R G HFS S+C + E + + W + ++NYI + E Q
Sbjct: 284 LIKAIDYWLTRGKEIGTHFSISSCEMLEEEARVLW-KAIRTNYIDLVEENQ 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,926
Number of Sequences: 27780
Number of extensions: 290873
Number of successful extensions: 854
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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