Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c17
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase, ...   123   9e-29
At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase f...    50   1e-06
At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    50   2e-06
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    41   8e-04
At5g10500.1 68418.m01216 kinase interacting family protein simil...    29   3.4  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    29   3.4  
At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family pro...    28   6.0  
At3g27590.1 68416.m03447 hypothetical protein                          27   7.9  

>At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase,
           putative / ubiquitin thiolesterase, putative similar to
           SP|Q9JKB1 Ubiquitin carboxyl-terminal hydrolase isozyme
           L3 (EC 3.4.19.12) (UCH- L3) (Ubiquitin thiolesterase L3)
           {Mus musculus}; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 234

 Score =  123 bits (297), Expect = 9e-29
 Identities = 68/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
 Frame = +2

Query: 134 VPLESNPDVLNKFLQKLGV-PNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENH 310
           +PLESNPDV+N++L  LG+ P++    DV GLD E L  VP+PVL+V+ L+PI+   E  
Sbjct: 14  LPLESNPDVMNQYLWGLGLAPDEAECNDVYGLDDELLEMVPKPVLAVLFLYPITKKSEEE 73

Query: 311 KKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNE 487
           +  ++ EI  K    S  +++MKQ + NACGTI L+H++ N T  I+LSDG  + +F   
Sbjct: 74  RIEQDKEIKEKVH--SDKVYFMKQTVGNACGTIGLLHAIGNITSEIKLSDGSFLDRFFKS 131

Query: 488 AKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFI 625
              +    R K LE    I +AH      G  +TP++ED  + HFI
Sbjct: 132 TANMTPMERAKFLENDSQIEDAHSVAVIAG--DTPASED-ADTHFI 174


>At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 334

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 40/157 (25%), Positives = 77/157 (49%)
 Frame = +2

Query: 134 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 313
           +P+ES+P +  + +Q++ V     + ++  LD  +L  + RPV  ++LL      Y+   
Sbjct: 4   LPVESDPGIFTEIIQQMQVKGV-QVEELYSLDFNSLDEI-RPVYGLILL------YKWRP 55

Query: 314 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 493
           + +EN ++    E + N F+  Q I+NAC T A++ SV  N+  I++    + +    AK
Sbjct: 56  EEKENRVVIT--EPNPNFFFASQIINNACATQAIL-SVLMNSSSIDIG-SELSELKQFAK 111

Query: 494 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 604
                 +G  +  +E I  AH   A+   ++    E+
Sbjct: 112 EFPPELKGLAINNNEAIRAAHNTFARPDPSSIMEDEE 148


>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
 Frame = +2

Query: 140 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 319
           +ES+P V  + +Q++ V     + ++  LD ++L+ + RPV  ++ LF      ++ + T
Sbjct: 6   IESDPGVFTELIQQMQVKGV-QVEELYSLDSDSLNNL-RPVYGLIFLFKWQAGEKDERPT 63

Query: 320 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNE-AKG 496
            ++++         N+F+  Q I+NAC T A++  + N+    E+  G     L E  K 
Sbjct: 64  IQDQV--------SNLFFANQVINNACATQAILAILLNSP---EVDIGPELSALKEFTKN 112

Query: 497 LDATARGKLLEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFV 634
             +  +G  +  S+ I  AH   A+      +    + +D   +HFIS++
Sbjct: 113 FPSDLKGLAINNSDSIRAAHNSFARPEPFVPEEQKAATKDDDVYHFISYI 162


>At1g65010.1 68414.m07368 expressed protein similar to
           endosome-associated protein (GI:1016368) [Homo sapiens];
           similar to Centromeric protein E (CENP-E protein)
           (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 27/86 (31%), Positives = 44/86 (51%)
 Frame = +2

Query: 311 KKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 490
           KK+EE E  S  +EVS  +  +K++  +AC       S+ NN  + E    ++Q+ L EA
Sbjct: 522 KKSEE-ENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEA 580

Query: 491 KGLDATARGKLLEKSEGIINAHKELA 568
           K      +  LL+K E + N   E++
Sbjct: 581 KAESMKLKESLLDKEEDLKNVTAEIS 606


>At5g10500.1 68418.m01216 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 848

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 410 ALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNT 589
           AL+H +    D ++     +QK  N ++  D    GK L++ E  +N  K++ QE +  +
Sbjct: 358 ALIHRLREEIDDLKAQIRALQKENNSSQTDDNMDMGKKLKEMEEKVNGVKDIDQEVEEKS 417

Query: 590 PSAEDPVN--HHFISFV 634
            + +  +   H  +SF+
Sbjct: 418 DNIDKHLTRAHMKLSFL 434


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +2

Query: 305 NHKKTEENEILSKGQEVS--GNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKF 478
           NH K  + E+ S G+E++  GN+  +K+    A  +      + +    +E    ++Q+ 
Sbjct: 543 NHVKEFDEEVSSMGKEMNRLGNL--VKRTKEEADASWEKESQMRDCLKEVEDEVIYLQET 600

Query: 479 LNEAKGLDATARGKLLEKS---EGIINAHKEL 565
           L EAK      +GK+L+K    + I++ + EL
Sbjct: 601 LREAKAETLKLKGKMLDKETEFQSIVHENDEL 632


>At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 992

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 282 KSSITESTGRGTHESVSGSSPMTSTIFHLFGTPSFCKNLFRT-SGLDSRGTKVSV 121
           K  + E+TG   H+ +   + +T     + G  ++C +L+ T  G+   G  V +
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGL 283


>At3g27590.1 68416.m03447 hypothetical protein
          Length = 92

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 485 EAKGLDATARGKLLEKSEGI 544
           +A+GL ATARG+ L  S G+
Sbjct: 5   DARGLPATARGRRLSSSSGV 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,913
Number of Sequences: 28952
Number of extensions: 267645
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)