Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c15
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 6e-17
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 44 1e-04
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 38 0.007
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 33 0.20
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 0.81
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 31 1.1
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 31 1.1
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_41063| Best HMM Match : VWA (HMM E-Value=1e-07) 27 9.9
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 27 9.9
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 140 bits (338), Expect = 1e-33
Identities = 61/89 (68%), Positives = 78/89 (87%)
Frame = +3
Query: 381 GGMDMGVFDGCLVAEELAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLV 560
GG+ +GV DGC+V EEL+Y C+GI TA+EA+ L + P+I+AGN+EQ+KKYLGR+I EP++
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVILAGNEEQKKKYLGRMIKEPIM 234
Query: 561 AAYGVTEPGAGSDVAGIKTRAEKKGDEWI 647
AAY VTEP AGSDVAGIKTRAEKKGDE++
Sbjct: 235 AAYCVTEPTAGSDVAGIKTRAEKKGDEYV 263
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +3
Query: 198 TGFCFELTDEQKALQELARKFTKDEIIPVAGQYDKTGE 311
+G F ++DE +ALQ++ARKF ++EI+P A ++DKTGE
Sbjct: 32 SGISFAMSDELRALQDMARKFAREEIMPKAAEHDKTGE 69
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 84.6 bits (200), Expect = 6e-17
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +3
Query: 216 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPW--PVVKKAWEVGLMNGHIPEHCGGM 389
LT EQ L+E+A F ++E+ P A Q DK +P KK ++G +P GG+
Sbjct: 41 LTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITVPVDDGGI 100
Query: 390 DMGVFDGCLVAEELAYGCTGIMTAMEA-SGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAA 566
G + +V EE++ I + A S L I GNKEQ++KYL +L+ + A
Sbjct: 101 GSGYMEHIIVLEEMSRVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKLLSGEHIGA 160
Query: 567 YGVTEPGAGSDVAGIKTRAEKKGDEWI 647
++E AGSDV +K RA+K GD ++
Sbjct: 161 LAMSEANAGSDVVSMKLRADKDGDHYV 187
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/145 (28%), Positives = 71/145 (48%)
Frame = +3
Query: 213 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGMD 392
+L + + L++ R F +E+ PVAG++DK YP VK E+GL+ +PE GG
Sbjct: 40 KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99
Query: 393 MGVFDGCLVAEELAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYG 572
+ F + EE++ GC + M + G Q+++++ ++ V +
Sbjct: 100 LDAFAYAIAMEEISRGCASLGCIMSVNNY--------GTDAQKEEWIKPFLNGDRVGCFA 151
Query: 573 VTEPGAGSDVAGIKTRAEKKGDEWI 647
++EP GSD KT A GD ++
Sbjct: 152 LSEPDNGSDAGAAKTTAVLDGDHYV 176
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Frame = +3
Query: 219 TDEQKALQELARKFTKDEIIPVAGQYDKTGEYP-WPVVKKAWEVGLMNGHIPEHCGGMDM 395
TD+ L+E KF + EI P +++K +P + KK + G + P GGM +
Sbjct: 259 TDDHVQLRENLNKFIEKEINPFVDEWEKAKMFPAHELFKKFGKAGYFGVNKPVKYGGMGL 318
Query: 396 GVFDGCLVAEEL-AYGCTGIMTAMEASGLGQTPIIIA-GNKEQQKKYLGRLIDEPLVAAY 569
+AEEL + C G+ A+ TP ++ G++E ++++L I V
Sbjct: 319 DYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGSEELKQQFLVPTIAGDFVTCL 378
Query: 570 GVTEPGAGSDVAGIKTRAEKKGDEWI 647
GV+E GAGSDVA IKT A K GD+++
Sbjct: 379 GVSETGAGSDVASIKTTAVKDGDDYV 404
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +3
Query: 213 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGMD 392
+L++E++ +++ +F K++I P+ + D+ + ++K +E GLM I GG D
Sbjct: 41 QLSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGGTD 100
Query: 393 MGVFDGCLVAEELAYGCTGIMTAMEASG-LGQTPIIIAGNKEQQKKYLGRLIDEPLVAAY 569
F LV EELA + + L I+ G KEQ+++YL +L + +V +
Sbjct: 101 STFFAANLVIEELAKVDPSVSVMCDVQNTLINNLIMTYGTKEQKQEYLPQLA-QHMVGGF 159
Query: 570 GVTEPGAGSDVAGIKTRAEKKGDEWI 647
++E +GSD +KT A +K ++
Sbjct: 160 CLSEESSGSDAFALKTVALEKDGHFV 185
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +3
Query: 555 LVAAYGVTEPGAGSDVAGIKTRAEKKGDEWI 647
+V GV+E GAGSDVAG+KT A+K GD+++
Sbjct: 1 MVGCIGVSEVGAGSDVAGLKTTAKKDGDDYV 31
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 504 GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWI 647
G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD ++
Sbjct: 98 GSPEQKKKWLDPLLNGDIRSAFCMTEPGVASSDATNMECKITRHGDHYV 146
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 504 GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWI 647
G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD ++
Sbjct: 138 GSPEQKKKWLDPLLNGEMRSAFCMTEPGVASSDATNMECKITRHGDHYV 186
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 492 IIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWI 647
+I G+ Q++K+L L+D + + + +TEP A SD A I++ GD ++
Sbjct: 318 LIRYGSDAQKEKWLEPLLDGRIRSCFAMTEPQVASSDAANIESSIRVDGDHYV 370
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 31.1 bits (67), Expect = 0.81
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = -2
Query: 607 PATSDPAPGSVTP*AATNGSSISLPRYFFCCSLFPAIMMGVWPSPLASIAVIIPVHPYAS 428
P+ S +PG +P + ++G S + P Y + P+ + P +
Sbjct: 431 PSYSPTSPG-YSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 489
Query: 427 SSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 490 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 537
Score = 29.1 bits (62), Expect = 3.3
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Frame = -2
Query: 607 PATSDP-APGSVTP*AATNGSSISLPRYFFCC-SLFPA------IMMGVWPS-PLASIAV 455
P + P +P +P AA+ G S S P + S+ PA G PS P + +
Sbjct: 392 PVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSP 451
Query: 454 IIPVH-PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
P + P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 452 ASPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 509
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 439 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 500 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 551
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 439 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 514 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 565
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 439 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
P + S + PS +P S P S P PTS ++ T YSP SY P +
Sbjct: 528 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 579
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 439 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
P + S + PS +P S P S P PTS ++ T YSP SY P++
Sbjct: 542 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 593
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 414 DNHQTHPCPYHRNVLECVRSLGQLPKPSLQR---ATGTPPSYHIDPPQE*FHPS 262
D HP +HR V R + Q PS+ R TPPS I + HP+
Sbjct: 450 DASPLHPAGFHRRVTPPSRGISQTRHPSIPRDLTDVCTPPSRGISQTRSPLHPA 503
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 399 HPCPYHRNVLECVRSLGQLPKPSLQR---ATGTPPSYHIDPPQE*FHPS 262
HP +HR V R + Q PS+ R TPPS I + HP+
Sbjct: 199 HPAGFHRRVTPPSRGISQTRHPSIPRDFTDAFTPPSRGISQTRSPLHPA 247
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 30.7 bits (66), Expect = 1.1
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Frame = -2
Query: 613 FIPATSDPAPGSVTP*AATNGSSISLPRYFFCC-SLFPAIMMGVWPSPLASIAVIIPVHP 437
+ P + +P S + +A+ S + P Y S PAI SP S A P +
Sbjct: 689 YSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPAS--PSYT 746
Query: 436 YASSSAT-RQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSP 305
AS S T PS TP S P + P PTS ++ T YSP
Sbjct: 747 PASPSYTPASPSYTPAS--PSYTPTIPSYSPTSPSYSPTSPSYSP 789
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 216 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVG 350
LT+ L + K E A Y+ TG W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635
>SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 439 PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVLSY*PATGMISSF 263
P S S R+PS P S+P C + PTS + G G S + P + + F
Sbjct: 651 PKTSGSLAREPSTAP-SLP------CDLVAPTSAKMYLAGQGGSGKTEWAPDSQQLEVF 702
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 469 ASIAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSP 305
A+ + ++P P +S S QPS+TP+ PP G TS + + H P
Sbjct: 379 ATSSSMLPNTPSSSPSTGTQPSSTPIHEPP-TQGTTLVTMETSTSHLKSSHHSRP 432
>SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 514 SLFPAIMMGVWPSPLASIAVIIPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQ 338
S+ P+I + PS SI I +S QP++ P S P P +P SQ
Sbjct: 20 SIHPSIQPSIQPSIHPSIHPSIQPASQPASQPASQPASQPASQPASQPASQPASQPASQ 78
>SB_41063| Best HMM Match : VWA (HMM E-Value=1e-07)
Length = 156
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 429 LAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAG 608
L YG ++ + +I A N Q +Y +IDE L +Y + P AG G
Sbjct: 14 LEYGKESVVKIGFNDYYNSSQLIDAVNNLAQARYKDTMIDEGLRVSYELFNPAAGHGARG 73
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 NLISP---NCTQRIKFLYY*FV*IVL*FKLGRSIQDEPVGADCS 124
NL++P NC Q + L Y I FKL RSI P GA CS
Sbjct: 249 NLVNPDSINCIQYQRPLPYSSATIA--FKLERSIPARPFGAPCS 290
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 461 NGSQWTWPNSHHYCWK*GA 517
NG +W+W N + CW G+
Sbjct: 180 NGIEWSWKNLNTLCWAIGS 198
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 631 FFSALVFIPATSDPAPGSVTP*AATNGSSISLP 533
F ++L+F+P TS S TP A + S +SLP
Sbjct: 117 FTTSLMFLPRTSSLKASSNTPTALSTTSLMSLP 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,555,924
Number of Sequences: 59808
Number of extensions: 449651
Number of successful extensions: 1390
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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