Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c15
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    79   3e-15
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    70   1e-12
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    39   0.003
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi...    34   0.071
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    32   0.38 
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    31   0.66 
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At4g08400.1 68417.m01388 proline-rich extensin-like family prote...    30   1.5  
At1g13960.2 68414.m01642 WRKY family transcription factor simila...    29   3.5  
At1g13960.1 68414.m01641 WRKY family transcription factor simila...    29   3.5  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   6.1  
At5g14240.1 68418.m01664 expressed protein                             27   8.1  
At1g50020.1 68414.m05613 expressed protein                             27   8.1  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
 Frame = +3

Query: 222 DEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEV-GLMNGH---IPEHCGGM 389
           D Q   +E   KF +D I P A + DKT  +P  V    W++ G  N H    PE  GG+
Sbjct: 33  DTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDV--NLWKLMGEFNLHGITAPEEYGGL 90

Query: 390 DMGVFDGCLVAEELAYGCTGIMTAMEA-SGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAA 566
            +G    C+  EE++     +  +  A S L    ++  G   Q++KYL +LI    V A
Sbjct: 91  GLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGA 150

Query: 567 YGVTEPGAGSDVAGIKTRAEK 629
             ++EP AGSDV G+K +AEK
Sbjct: 151 LAMSEPNAGSDVVGMKCKAEK 171


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
 Frame = +3

Query: 216 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGMDM 395
           LT E++A+++  R+  + E+ P+  +Y +  E+P+ +  K   +G+  G I  + G   +
Sbjct: 55  LTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGY-GCPGL 113

Query: 396 GVFDGCLVAEELAYGCTGIMT-AMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYG 572
            +    +   E+A       T  +  S LG   I + G++ Q++KYL  L     VA + 
Sbjct: 114 SITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWA 173

Query: 573 VTEPGAGSDVAGIKTRAEKKGDEW 644
           +TEP  GSD +G+ T A K    W
Sbjct: 174 LTEPDNGSDASGLGTTATKVEGGW 197


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 504 GNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRA--EKKGDEWI 647
           G +EQQKK+L       ++  Y  TE G GS+V G++T A  + K DE++
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFV 163


>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
           similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
           NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
           Phosphotransferase enzyme family, PF00441: Acyl-CoA
           dehydrogenase C-terminal domain, PF02770: Acyl-CoA
           dehydrogenase middle domain
          Length = 824

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 468 ASGLGQTPIIIA-GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDE 641
           A   G   +I+  GNKEQ  ++L  L++  + + + +TEP  A SD   I+    ++GD 
Sbjct: 521 APDTGNMEVILRYGNKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDS 580

Query: 642 WI 647
           ++
Sbjct: 581 YV 582


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 439  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
            P + S +   PS +P S  P  S   P   PTS A+  T  GYSP   SY P +
Sbjct: 1666 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1717



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 439  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 281
            P + S +   PS +P S  P  S   P   PTS A+  T   YSP   SY P +
Sbjct: 1617 PTSPSYSPTSPSYSPTS--PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1668



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 439  PYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSP 305
            P + S +   PS +P S  P  S   P   PTS A+  T   YSP
Sbjct: 1610 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPAYSPTSPAYSP 1652



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 448  PVHP-YASSSATRQPSNTPMS-IPPQCSGMCPFIRPTSQAFFTTGHGYSPVLSY*PATGM 275
            P  P Y+ +S    P++   S   P  S   P   PTS ++      YSP ++Y P+   
Sbjct: 1687 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNAR 1746

Query: 274  IS 269
            +S
Sbjct: 1747 LS 1748



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -2

Query: 439  PYASSSATRQPSNTPMSIP--PQCSGMCPFIRPTSQAFFTTGHGYSP 305
            PY    A   PS++P   P  P  S   P   PTS  +  T  GYSP
Sbjct: 1530 PYVGGMAF-SPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1575


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +3

Query: 405 DGCLVAEELAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYGVTEP 584
           DG  V    A  C G +   +  G G T + I  +     ++L +  D   +  YG++  
Sbjct: 354 DGLFVGSSSAMNCVGAVRVAQTLGPGHTIVTILCDSGM--RHLSKFHDPKYLNLYGLSPT 411

Query: 585 GAGSDVAGIK 614
             G +  GIK
Sbjct: 412 AIGLEFLGIK 421


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 451 IPVHPYASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFF-TTGHGYSPV 302
           + + P  S   +R P++TP+SIPP    M P  R T  +    T +  +PV
Sbjct: 309 LDLRPGQSFVVSRNPNSTPVSIPPGSRTMLPPFRWTGSSLVGGTSNSTAPV 359


>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 513

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 429 APQPQDNHQTHPCPYHRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPPQE*FHPS 262
           +P P+ N+++ P PY+R+      S    P P +   +  PP  +  PP   + PS
Sbjct: 248 SPSPKVNYKSPPPPYYRSPPPPYYS----PSPKVDYKSPPPPYVYSSPPPPYYSPS 299


>At1g13960.2 68414.m01642 WRKY family transcription factor similar
           to WKRY DNA-binding protein GB:AAD17441
          Length = 487

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 433 ASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSP 305
           ++S +T  PS   +S+PP         RP S+ FF  G G+SP
Sbjct: 9   STSKSTGAPSRPTLSLPP---------RPFSEMFFNGGVGFSP 42


>At1g13960.1 68414.m01641 WRKY family transcription factor similar
           to WKRY DNA-binding protein GB:AAD17441
          Length = 514

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 433 ASSSATRQPSNTPMSIPPQCSGMCPFIRPTSQAFFTTGHGYSP 305
           ++S +T  PS   +S+PP         RP S+ FF  G G+SP
Sbjct: 9   STSKSTGAPSRPTLSLPP---------RPFSEMFFNGGVGFSP 42


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -2

Query: 637 SPFFSALVFIPATSDPAPGSVTP*AATNGSSISLPRYFFCCSLFPAIMMGVWPSPLASIA 458
           SP  S+ V  PATS P  GS+ P + +  S  + P         PA      P   +S  
Sbjct: 186 SPKSSSAVS-PATSPP--GSMAPKSGSPVSPTTSP---------PAPPKSTSPVSPSSAP 233

Query: 457 VIIPVHPYA-SSSATRQPSNTPMSIPP 380
           +  P  P A  SS+T  PS+ PM+ PP
Sbjct: 234 MTSPPAPMAPKSSSTIPPSSAPMTSPP 260


>At5g14240.1 68418.m01664 expressed protein
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 510 KEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWI 647
           +E +KK L  L +   V  YG   P +GSD     T+A    ++W+
Sbjct: 80  EEYRKKRLSELREAAKVKRYGTVTPISGSDFVREVTQA--SAEDWV 123


>At1g50020.1 68414.m05613 expressed protein
          Length = 209

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = -2

Query: 538 LPRYFFCCSLFPAIMMGVWPSPLASIAVIIPVHPYASSSATRQPSNTPMSIPP 380
           +PR     ++     +G WP  + ++     ++ Y  +      S TP+S PP
Sbjct: 136 IPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIHDGSRTPVSPPP 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,661
Number of Sequences: 28952
Number of extensions: 329688
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)