Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c14
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        29   2.7  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    29   2.7  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    29   2.7  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 215  GRVTSFLNKNCSLPPPIVRVCSQCYELRKE 304
            GR TSF++++C+L   +VRV S   +L  E
Sbjct: 915  GRATSFISEDCNLLSELVRVLSDADQLVPE 944


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
            protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 215  GRVTSFLNKNCSLPPPIVRVCSQCYELRKE 304
            GR TSF++++C+L   +VRV S   +L  E
Sbjct: 915  GRATSFISEDCNLLSELVRVLSDADQLVPE 944


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
            helicase protein 2 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 215  GRVTSFLNKNCSLPPPIVRVCSQCYELRKE 304
            GR TSF++++C+L   +VRV S   +L  E
Sbjct: 915  GRATSFISEDCNLLSELVRVLSDADQLVPE 944


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 VIYNFFCYVYIEKKIQVNXCHKNSFLFHF 534
           ++ NFF ++Y    + VN C+ N  +F++
Sbjct: 82  IVNNFFVFMYYIFLVLVNVCNNNLLIFYY 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,820
Number of Sequences: 27780
Number of extensions: 281508
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)