Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c13
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.17 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   6.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 145 KAGGMRITQHKTPHSKDSKEPANEDLTGLS-GPSPVPSNPISIAGAP 282
           K  G   T   TP+S  S  P  E+    + G  P PS+P SI+  P
Sbjct: 27  KLEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDP 73


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 NNYTIF*YFEFYDCLTFSIPLLCINLLVIKCAAFYF 390
           + Y I+ +   + CL F + +L I L+     AF+F
Sbjct: 294 SRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 NNYTIF*YFEFYDCLTFSIPLLCINLLVIKCAAFYF 390
           + Y I+ +   + CL F + +L I L+     AF+F
Sbjct: 294 SRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 NNYTIF*YFEFYDCLTFSIPLLCINLLVIKCAAFYF 390
           + Y I+ +   + CL F + +L I L+     AF+F
Sbjct: 294 SRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 NNYTIF*YFEFYDCLTFSIPLLCINLLVIKCAAFYF 390
           + Y I+ +   + CL F + +L I L+     AF+F
Sbjct: 294 SRYFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 331 SPKPPAHINLRPSPNIQQPRK 393
           SP PP  I+ +P+P+ Q P +
Sbjct: 329 SPPPPYQISAQPTPS-QSPNQ 348


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 502 IPTIILYFNILNFMIA 455
           +P I  YFN + FM+A
Sbjct: 271 VPLIGTYFNCIMFMVA 286


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 502 IPTIILYFNILNFMIA 455
           +P I  YFN + FM+A
Sbjct: 271 VPLIGTYFNCIMFMVA 286


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 502 IPTIILYFNILNFMIA 455
           IP +  YFN + FM+A
Sbjct: 271 IPLLGTYFNCIMFMVA 286


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 502 IPTIILYFNILNFMIA 455
           IP +  YFN + FM+A
Sbjct: 271 IPLLGTYFNCIMFMVA 286


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 502 IPTIILYFNILNFMIA 455
           IP +  YFN + FM+A
Sbjct: 271 IPLLGTYFNCIMFMVA 286


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 250 EREKAQRDQSSLH 212
           E EKA+RD SS+H
Sbjct: 93  EVEKAKRDLSSVH 105


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 235 GPSPVPSNPISIAGA 279
           GP PVPS P    G+
Sbjct: 204 GPEPVPSTPYPPPGS 218


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 TPEAAQVAHSPKPPAHINLRPSPNIQQP 387
           +PE +QVA S   P+   L P    + P
Sbjct: 178 SPEMSQVAASWHTPSMYPLSPGAGFRSP 205


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 TPEAAQVAHSPKPPAHINLRPSPNIQQP 387
           +PE +QVA S   P+   L P    + P
Sbjct: 70  SPEMSQVAASWHTPSMYPLSPGAGFRSP 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,342
Number of Sequences: 336
Number of extensions: 3250
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)