Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c13
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.75
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.7
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.7
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 1.7
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.3
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 7.0
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 7.0
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 7.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.2
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 25 9.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +1
Query: 196 SKEPANEDLTGL-SGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPSP 372
S P + +G S P PVP+ I P A P + + PKP P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 373 NIQQP 387
++ P
Sbjct: 1108 SVAVP 1112
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 163 ITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFT---PEAAQVAHS 333
++QHKTP K K LT + SN S G+ N ++F + Q + S
Sbjct: 111 LSQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQRGSLNTAPSNFAYSHSSSLQTSAS 170
Query: 334 PKPPAHIN 357
+PP N
Sbjct: 171 SRPPVLSN 178
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = +1
Query: 133 PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPE 312
P KA GM +T P S + L PVPS S+A P A T
Sbjct: 1457 PVQPKAPGM-VTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515
Query: 313 AAQVAHSPKPPAHINLRPSPNIQQPRK*NAAHL 411
++ + S AH+ PSP P+ +AA L
Sbjct: 1516 SSTLPPSQSSFAHV---PSPAPPAPQHPSAAAL 1545
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 94 SSTEETSQLKAGHPPAVKAGGMRITQHK 177
S+T TSQLK H VK +T+H+
Sbjct: 24 STTPSTSQLKHSHESNVKMSTSTVTEHR 51
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 244 PVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPS 369
P P P + G P A QV H+ + P N RPS
Sbjct: 422 PAPFPPFMMPGLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPS 463
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 76 NYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPS 255
NY ++ SS +E +LK GH ++ G + +H + +S P D++ L+ P S
Sbjct: 4 NYTSLKSSVDEEDELKTGHEIDLEKG--PLPEHNS--EGESTLPPYSDISKLANLVPEDS 59
Query: 256 N 258
+
Sbjct: 60 S 60
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.0
Identities = 26/104 (25%), Positives = 40/104 (38%)
Frame = +1
Query: 145 KAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQV 324
K G + K SK+ AN TG SG +S ++ F P V
Sbjct: 399 KKSGDNSEKTKNSLKSSSKKSAN---TG-SGQGKTKVEYVSYNSVDKGNSSPFKPLELNV 454
Query: 325 AHSPKPPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNGIENVR 456
K A ++ PS N+Q+ + A +RL + +E +R
Sbjct: 455 VGEKKANAEVDSLPSENVQESED-DKAFEENRRLRNLGSVEYIR 497
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 91 MSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISI 270
+SS + V + + +Q K P S + PA+ +S PV S
Sbjct: 173 LSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSA 232
Query: 271 AGAPNKGN 294
+ A N G+
Sbjct: 233 SNAANSGS 240
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 103 RLTTLLFDNFEFNLFMISEVYQCNATSQILRV 8
+L LF N E NLF++ + N S IL+V
Sbjct: 402 KLENTLFSNSELNLFLLHYLSLDNDLSNILKV 433
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 187 SKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRP 366
S S++ A + S P P P+ P+ + AP+ P A +V +P+ PA +
Sbjct: 498 SSASQKAAQPSVITPSVPQP-PAAPV-VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPE 555
Query: 367 SPNIQQ 384
+P++ Q
Sbjct: 556 APSVPQ 561
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 232 SGPSPVPSNPI--SIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQQP 387
S P P P+ P+ + P + PEA V P+PPA + P++ QP
Sbjct: 633 SVPQP-PAAPVVPEVPSVPQRPAVPVVPEAPSV---PQPPAAPVVPEVPSVPQP 682
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 242 LPFRPIRSPLLELQTKVMQTSLQK 313
LPFRP++ LL+ QT + + +++K
Sbjct: 167 LPFRPLQGFLLDCQTVLPKVAVEK 190
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 148 AGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEA 315
+G + + H + HS+ + +D+ S SP + S+ G+ G +TP++
Sbjct: 389 SGTSQASAHPSIHSQSATFNNTQDVNRQSVSSPKVVSSSSVTGSGASGRKVYTPQS 444
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 7.0
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 366 WSEINVRWRLRTVGHLSCFWSEV 298
++E++ W+ TVG S +W ++
Sbjct: 279 YNEVDAAWKSLTVGDKSYYWGDI 301
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 514 AIDWLCPWPPCLHEQCRACVAVLPSKAIKHASWFVFLSRNSD 639
A+ W+ W PC+ + R + PSK+++ F ++ +SD
Sbjct: 375 AMHWIKAWDPCVFGKSR----LQPSKSMRFNPRFTNITSDSD 412
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 229 LSGPSPVPSNPISIAGAP 282
L+GP PS+P+S G+P
Sbjct: 15 LTGPRAAPSSPVSTNGSP 32
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +1
Query: 160 RITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPK 339
+ T PH + PA T ++ S+P+ AP+ F P + A S
Sbjct: 280 KTTAPPPPHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPS--TLQFNPSPSPAAPS-Y 336
Query: 340 PPAHINLRPSPNIQQ 384
PP +++ + ++ Q
Sbjct: 337 PPVDASVKQAADLDQ 351
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 208 ANEDLTGLSGPSPVPSNPISIAGAPNKGNAD 300
AN L+G+ P PV SNP N AD
Sbjct: 65 ANVSLSGVEEPVPVESNPSDQDVMSNSTEAD 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,073
Number of Sequences: 5004
Number of extensions: 52427
Number of successful extensions: 154
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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