Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c13
(640 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 4.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 4.4
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 22 5.8
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 22 5.8
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 22 5.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -2
Query: 399 VLLSGLLDVWAWSEINVRWRLRTVG 325
+L++ L W+++N+RW + G
Sbjct: 69 LLITNLWLKLEWNDVNMRWNVSDYG 93
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +1
Query: 307 PEAAQVAHSPKPPAHINLRPSPNIQ 381
P A Q+ H+P H P P ++
Sbjct: 454 PAAIQIGHTPHHHPHPPETPGPQVE 478
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 139 AVKAGGMRITQHKTPHSKDSKEPANEDLTGLS 234
A AG + I + P D++EP ++ L+G+S
Sbjct: 492 ACTAGTLGII-FQAPSLYDTREPVDQQLSGIS 522
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 181 PHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAP 282
P S + P +++ +SG P+P+ P S+ P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 455 LTFSIPLLCINLLVIKC-AAFYFLGCWMFGLGL 360
++ ++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 455 LTFSIPLLCINLLVIKC-AAFYFLGCWMFGLGL 360
++ ++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 455 LTFSIPLLCINLLVIKC-AAFYFLGCWMFGLGL 360
++ ++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 502 IPTIILYFNILNFMIA 455
+P I YFN + FM+A
Sbjct: 254 VPLIGSYFNCIMFMVA 269
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 502 IPTIILYFNILNFMIA 455
+P I YFN + FM+A
Sbjct: 254 VPLIGSYFNCIMFMVA 269
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 502 IPTIILYFNILNFMIA 455
+P I YFN + FM+A
Sbjct: 254 VPLIGSYFNCIMFMVA 269
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 502 IPTIILYFNILNFMIA 455
+P I YFN + FM+A
Sbjct: 322 VPLIGSYFNCIMFMVA 337
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,760
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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