Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c12
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 170 5e-43
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 166 1e-41
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 1.6
At5g23040.2 68418.m02694 expressed protein similar to unknown pr... 28 3.6
At5g23040.1 68418.m02693 expressed protein similar to unknown pr... 28 3.6
At5g26850.1 68418.m03203 expressed protein 28 4.8
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin... 27 6.3
At1g48250.1 68414.m05388 hypothetical protein 27 8.3
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 170 bits (414), Expect = 5e-43
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Frame = +1
Query: 103 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 279
M+E TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +FVF
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 280 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 459
F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 460 G 462
G
Sbjct: 121 G 121
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 166 bits (403), Expect = 1e-41
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Frame = +1
Query: 103 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 279
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 280 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 459
F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 460 G 462
G
Sbjct: 121 G 121
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 262 DVVFVFGFKTNFGGGKSTGFALIYDT 339
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 271 FVFGFKTNFGGGKSTGFALIYDT 339
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At5g23040.2 68418.m02694 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 159 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKERV 31
QQ GHE + + +F + S IRR +++ K++ K++V
Sbjct: 93 QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKV 135
>At5g23040.1 68418.m02693 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 159 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKERV 31
QQ GHE + + +F + S IRR +++ K++ K++V
Sbjct: 93 QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKV 135
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 142 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 294
M +++ ++ D++ P +SK E + K+ + + TPD F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 370
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 312 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 470
N F++++ S V A+ +V PP PVR +A + Q E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255
>At1g48250.1 68414.m05388 hypothetical protein
Length = 354
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 183 CFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIR--FDLRHTRSGQE 356
C R++ R+Q+R EA V+ +R + ++ L + H SG E
Sbjct: 149 CSPLRRSKRRQNRLEEEADVAVEESTRREIGQEEEEALGETSCGGEEEAHEEAHIESGVE 208
Query: 357 VRAQAQVSPPRPVREEE 407
VRA + S R +R+EE
Sbjct: 209 VRAPLRRSKRRRIRDEE 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,799
Number of Sequences: 28952
Number of extensions: 237865
Number of successful extensions: 713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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