Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c10
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    29   0.033
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.72 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   5.1  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   5.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 0.033
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +3

Query: 102 KTAKSQYLRQQPYSITPRQMPEYIE-GPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRL 278
           K  K+Q  + +P S T    P+ I+  P + D  +         SP   E   LI   RL
Sbjct: 269 KEKKAQKEKDKPNSTT-NGSPDVIKVEPELSDSEKTLCNGSKGISP---EQEELIH--RL 322

Query: 279 IESPRVIESPRIYEASRIINQPVITETPCNSVAPRVPSATIIT 407
           +      E P   +  RIINQP+  E  C+     +   TI+T
Sbjct: 323 VYFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITILT 365


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 391  RPR*LRTALRPSARTWPTQSS 453
            RP    T  RP+   WPTQ +
Sbjct: 1064 RPTTTSTTTRPTTTNWPTQGT 1084


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  MSKFVLLLISMTIFDKTAKSQYLR 128
           +S F+L+ IS+  F    K  YLR
Sbjct: 139 LSSFILVCISVDRFYAVLKPLYLR 162


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  MSKFVLLLISMTIFDKTAKSQYLR 128
           +S F+L+ IS+  F    K  YLR
Sbjct: 139 LSSFILVCISVDRFYAVLKPLYLR 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,696
Number of Sequences: 336
Number of extensions: 2483
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)