Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c10
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 30 1.0
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 1.7
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 29 1.7
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 3.1
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049... 28 4.0
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 28 5.3
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 27 7.1
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 27 7.1
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 27 7.1
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 9.3
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 27 9.3
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15... 27 9.3
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 27 9.3
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 175 KGPEFTTDQGSSRALDSTIVPGSSRVRGSLRALGSS 282
+G T GSSR + + PGSS +G +R G+S
Sbjct: 107 RGRSLTNGAGSSRGMRGFVPPGSSSGQGGVRGHGAS 142
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +3
Query: 162 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 341
P + ++ P + + P +S ++I P +S ++I P ++ +II++
Sbjct: 334 PIETQSEKIISEPIDTQSEKIISEPIETQSEKIISEPIDAQSEKIISEPIEAQSEKIISE 393
Query: 342 PVITET 359
P+ T+T
Sbjct: 394 PIDTQT 399
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 162 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 341
P + ++ P + + P +S ++I P ++ ++I P ++ +II++
Sbjct: 382 PIEAQSEKIISEPIDTQTEKIISDPIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISE 441
Query: 342 PVITET 359
P+ T+T
Sbjct: 442 PIDTQT 447
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 162 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 341
P + ++ P + + P +S ++I P ++ ++I P ++ +II++
Sbjct: 406 PIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISEPIDTQTEKIISDPIDTQSEKIISE 465
Query: 342 PVITET 359
P+ T+T
Sbjct: 466 PIDTQT 471
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 452 LDCVGQVLADGRSAVRNYRGRWNPWSDTVAWCLGYHRLVDDP 327
LD VG V ADG + + +W+P D A L+ DP
Sbjct: 50 LDLVGYVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 91
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 293 SRALDEPRALNEPRTLDEPGTIVESRALEDP 201
+R +D PR ++ PR +D P I R ++ P
Sbjct: 270 ARTIDPPRPIDPPRPIDPPRPIDPPRPIDPP 300
>03_05_1142 -
30703333-30703469,30704058-30704205,30704893-30704963,
30705189-30705285,30705371-30705562,30705639-30705977
Length = 327
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 218 RALEDPWSVVNSGPFDV---FRHLSWSYAVGLLPEILRFCCL-IKYSHRNQQQNKL 63
RAL+D V P +V +R + A+GLLPE FC I+ N++ KL
Sbjct: 96 RALDDAARAVQLSPSNVKAYYRAAKAAIALGLLPEAAAFCRRGIEQDPANEELKKL 151
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 150 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESP 254
P Q+ Y RVYD R + PR SPRL SP
Sbjct: 3 PNQLRPYEYTTRVYD-VRHDQTPRLVSSPRLASSP 36
>12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 463 MIINWIVLAKFLQTVGVQSVIIVADGTLGATL 368
+I NWI +A TV Q VII GT +T+
Sbjct: 957 IISNWIFIAVIAATVAFQVVIIEFLGTFASTV 988
>11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 463 MIINWIVLAKFLQTVGVQSVIIVADGTLGATL 368
+I NWI +A TV Q VII GT +T+
Sbjct: 935 IISNWIFIAVIAATVAFQVVIIEFLGTFASTV 966
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 87 MTIFDKTAKSQYLRQQPYSITPRQMPEYIEGPRVYDG 197
+ IF+K +Q L Q P T E +EG +YDG
Sbjct: 317 IAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDG 353
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 200 WSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLIKYSHRNQQQNKLRHVFS 48
WS+ P R L ++Y + +LR L+K ++ NQ Q +V S
Sbjct: 132 WSLAEQVPRGFRRKLLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSS 182
>10_08_0498 -
18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 348 ITETPCNSVAPRVPSATIITDCTPTVCKNLANTIQLMIICNLLQNT 485
+TE C S R +A I +D P + +N+ Q +CN L T
Sbjct: 651 VTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGT 696
>07_01_0023 -
154119-154541,154697-154741,154875-154922,156104-156185,
156365-156444,156606-156677,156827-156921,157479-157515
Length = 293
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 147 TPRQMPEYIEGPRVYDGPRIF 209
+PRQ P + GPR+ DG R F
Sbjct: 263 SPRQPPPHAHGPRMPDGTRGF 283
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +3
Query: 306 PRIYEASRIINQPVITETPCNSVAPRVP---SATIITDCTPTVCKNL 437
PRI + I + ET CN AP S T++ CT + + L
Sbjct: 174 PRIVMVQQCIRDKAVLETICNYAAPTKEFHHSRTVVCFCTAVIVECL 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,611
Number of Sequences: 37544
Number of extensions: 290061
Number of successful extensions: 834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -