Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c10
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 30 0.89
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 1.6
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 1.6
AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein. 29 1.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 2.1
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 3.6
Z99102-2|CAB11775.1| 499|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 281 DEPRALNEPRTLDEPGTIVESRALEDPWSVVNSGPF 174
+EPR E + L EPG E+ LE P + NS F
Sbjct: 296 EEPREYEEDKKLKEPGEHEETEKLEKPNKLENSKKF 331
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 269 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 99
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 269 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 99
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368
>AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein.
Length = 183
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 269 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 99
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 3 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 56
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/78 (25%), Positives = 24/78 (30%)
Frame = +3
Query: 147 TPRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEAS 326
T + P EG P E + P E P G E E P E S
Sbjct: 491 TTTEKPVITEGSTTNKQPTTSEHESTTEVPTTTEEPTTTTGQHKTEKAITTEEPTTTEES 550
Query: 327 RIINQPVITETPCNSVAP 380
+ TE P N+ P
Sbjct: 551 STTEEVTTTEEPANTGNP 568
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 201 RIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRI-YEASRIINQPVITE 356
RIF D P++I+ P E P E PR +R++ +P TE
Sbjct: 318 RIFSSEHLLDEPKMIDVPSGYERPTGAEETSTPRQPRARTPRARLLFEPCFTE 370
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 291 RVIESPRIYEASRIINQPVITETPCNSVAPRVPSATII 404
+VIESP +Y + + P+ + ++ P+VP +T++
Sbjct: 412 KVIESPFLYLTLDLPSAPLYRDVQLQNIIPQVPLSTLL 449
>Z99102-2|CAB11775.1| 499|Caenorhabditis elegans Hypothetical
protein B0331.1 protein.
Length = 499
Score = 27.1 bits (57), Expect = 8.3
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = -2
Query: 527 YRRCQLQSQFGTTLCVL**ITDDH*LDCVGQVLADGRSAVRNYRGRWNPWSDTVAWCLGY 348
++RC L GT + + + H L V V + V Y W+ V W LGY
Sbjct: 181 FKRCTLDIICGTAMGIKLDAQNVHNLGYVQAVEGFNKLTVE-YSLNPFLWNRFVYWALGY 239
Query: 347 HRLVDDP*RFVYPRGFYHSRALDEPRAL 264
++ DD F+Y + + A+ E R +
Sbjct: 240 QKMHDD---FLYTLKKFTNDAIVERRTV 264
>Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical
protein F35E2.6 protein.
Length = 698
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 133 CCRRYCDFAVLSNIVIEINSKTNLDMFF 50
CC C +A IV+E N K+ L F
Sbjct: 90 CCSMICLYAFFPEIVVETNQKSALRALF 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,864,404
Number of Sequences: 27780
Number of extensions: 251689
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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