Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c10
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.84 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   0.84 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 386 NPWSDTVAWCLGYHRLVDDP 327
           NPW+  + + +G HR++  P
Sbjct: 396 NPWTKKLEFVVGQHRILKGP 415


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 386 NPWSDTVAWCLGYHRLVDDP 327
           NPW+  + + +G HR++  P
Sbjct: 102 NPWTKKLEFVVGQHRILKGP 121


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 201 RIFEGPRFYDSPRLIESP 254
           RIF GP++    +LIE P
Sbjct: 517 RIFIGPKYDSHHKLIEIP 534


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 201 RIFEGPRFYDSPRLIESP 254
           RIF GP++    +LIE P
Sbjct: 517 RIFIGPKYDSHHKLIEIP 534


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 314 YPRGFYHSRALDEPRALNEPRTLDEPGTIVESRALEDPW 198
           YP   + +   +    +N+  T++    I  S AL+ PW
Sbjct: 131 YPSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPW 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,498
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)