Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c10
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol... 32 0.27
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 31 0.63
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 30 1.1
At5g15420.1 68418.m01805 expressed protein 29 2.6
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i... 28 3.4
At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containi... 28 3.4
At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containi... 28 3.4
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 28 4.5
At2g35610.1 68415.m04365 expressed protein 28 4.5
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family... 28 4.5
At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family... 27 5.9
At4g34540.1 68417.m04908 isoflavone reductase family protein sim... 27 5.9
At3g28830.1 68416.m03597 expressed protein 27 5.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 5.9
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 27 7.8
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 27 7.8
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 27 7.8
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor... 27 7.8
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 27 7.8
>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
oligopeptidase family protein similar to SP|P27237
Oligopeptidase A (EC 3.4.24.70) {Salmonella
typhimurium}; contains Pfam profile PF01432: Peptidase
family M3
Length = 791
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 84 SMTIFDKTAKSQYLRQQPYSITPRQMPEYIEGPRVYDG 197
SMT +D T S+ LR+ Y I ++ Y P+V DG
Sbjct: 425 SMTHWDTTFWSERLRESKYDINEEELRPYFSLPKVMDG 462
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 30.7 bits (66), Expect = 0.63
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 228 DSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQPV-ITETPC 365
+S + PR++E P+ + + + +E R+Y +I+ PV + E PC
Sbjct: 654 NSLSITNCPRILELPKNLSNVQSLERLRLYACPELISLPVEVCELPC 700
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 183 RVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASR 329
RV PR F PR +SPR SPR +E P VI++ +E+ R
Sbjct: 97 RVPASPRAFVYPRSVESPR-FGSPRSVESPCFGSPIGVIDTASPFESVR 144
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 180 PRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPR 311
PR + PR E PRF SPR +ESP +I++ ES R
Sbjct: 102 PRAFVYPRSVESPRF-GSPRSVESPCFGSPIGVIDTASPFESVR 144
Score = 27.9 bits (59), Expect = 4.5
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +3
Query: 231 SPRLI--ESPRLIEGPRLIESPRVIESPRIYEASRIINQP---VITETPCNSVAPRVPSA 395
SPRL SPR PR +ESPR SPR E S P + T +P SV V
Sbjct: 93 SPRLRVPASPRAFVYPRSVESPR-FGSPRSVE-SPCFGSPIGVIDTASPFESVREAVSKF 150
Query: 396 TIITD 410
ITD
Sbjct: 151 GGITD 155
>At5g15420.1 68418.m01805 expressed protein
Length = 159
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 219 RFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ-PVITETPCNSVAP 380
+F +LI+ +L+E RL++ ++ + ++ + SR++ + P+I + P P
Sbjct: 36 QFAQKSQLIDRRQLVERSRLVKIIQLAQKSQLIDTSRLVERSPLIEDHPARPEEP 90
>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH4 (SUVH4) GI:13517748
Length = 624
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 315 YEASRIINQPVITETPCNSVAPRVPSATIITDCTPTVCKNLANTIQ 452
Y R+ QP +T N VA R+P++T ++ VC++++ ++
Sbjct: 298 YRLKRLEGQPELTTDQVNFVAGRIPTST--SEIEGLVCEDISGGLE 341
>At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 683
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 137 GLLPEILRFCCLIKYSHRNQQQNKLRHVF 51
G++P+++ + CL+ R++Q K + VF
Sbjct: 253 GIIPDVVSYTCLLNSYGRSRQPGKAKEVF 281
>At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 822
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 137 GLLPEILRFCCLIKYSHRNQQQNKLRHVF 51
G++P+++ + CL+ R++Q K + VF
Sbjct: 385 GIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 109 QNRNISGSNPTA*LQDKCRNTSKGPEF 189
+ +N + +NPT+ Q K +NTS+GPEF
Sbjct: 351 EKKNNTVANPTS-QQPKRQNTSEGPEF 376
>At2g35610.1 68415.m04365 expressed protein
Length = 644
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 108 AKSQYLRQQPYSITPRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESP 254
A Q LR +PY++ EG R R+ EG FYD P +SP
Sbjct: 355 AMYQQLRLEPYAVHTTFQYAGTEGKR----HRLREGMVFYDPPEYYDSP 399
>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; contains some similarity to
transcription factor [Danio rerio]
gi|15617376|emb|CAC69871
Length = 367
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 216 PRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRI---INQPVITETPCNSVAPRV 386
P F+ PR++ P LI G + +P + + ++ + QP TP S+AP
Sbjct: 271 PSFFGPPRMMAQPHLIPGVSMPTAPPLNPNNASHQQRSYGTPVLQPFPPPTPPPSLAP-A 329
Query: 387 PSATIIT 407
P+ +I+
Sbjct: 330 PTGPVIS 336
>At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family members At5g09530,
At5g09520, At1g44222 [Arabidopsis thaliana]
Length = 144
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +3
Query: 66 FVLLLISMTIFDKTAKSQYLRQQPYSITPRQMPEYIEG--PRVYDGPRIF--EGPRFYDS 233
F++ + S +F + + + +++PEY E P V + P + E P +
Sbjct: 15 FLVFISSSLLFPTPSFAARVSHSLVQEEVKKVPEYTEPEEPEVPEEPELPSPEEPEIPEE 74
Query: 234 PRLIESPRLIEGPRLIESPRVIESP 308
P + E P + P + E P E P
Sbjct: 75 PEIPEEPEVPGEPEVPEEPEEPEEP 99
>At4g34540.1 68417.m04908 isoflavone reductase family protein
similar to phenylcoumaran benzylic ether reductase
homolog Fi1 [Forsythia x intermedia][GI:7578895];
contains isoflavone reductase domain PF02716
Length = 306
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 290 RALDEPRALNEPRTLDEPGTIVESRALEDPW 198
+ +D+PR LN+ L PG I L + W
Sbjct: 198 KTIDDPRTLNKTLYLSPPGNICSMNDLVELW 228
>At3g28830.1 68416.m03597 expressed protein
Length = 539
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 127 GSNPTA*LQDKCRNTSKGPEFTTDQGSSRALDSTIVPGSSRVRGSLRALGSSRALE**NP 306
GS T + + + G + GS +A S V G S +GS A GS+ A +
Sbjct: 258 GSAATKSKESSGGSATTGKTSGSPSGSPKASPSGSVSGKSSSKGSASAQGSASAQGSASA 317
Query: 307 LGYTKRQGSSTS 342
G QGS+++
Sbjct: 318 QGSASAQGSASA 329
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 5.9
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 135 PYSITPRQMPEYIEGPRVYDGPRIFEGPR--FYDSPRLIESPRLIEGPRLIESPRVIESP 308
P P P + P V+ P P Y P + SP P P + SP
Sbjct: 612 PVYSPPPPPPVHSPPPPVFSPPPPVHSPPPPVYSPPPPVYSPP--PPPVKSPPPPPVYSP 669
Query: 309 RIYEASRIINQPVITETPCNSVAPRVPSATI 401
+ ++ + P T+TP NS PR PS T+
Sbjct: 670 PLLPP-KMSSPP--TQTPVNSPPPRTPSQTV 697
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 157 KCRNTSKGPEFTTDQGSSRALDSTIV 234
KC NT KG F + +SR++ STI+
Sbjct: 105 KCMNTEKGSSFYEFRRNSRSVRSTIL 130
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 157 KCRNTSKGPEFTTDQGSSRALDSTIV 234
KC NT KG F + +SR++ STI+
Sbjct: 99 KCMNTEKGSSFYEFRRNSRSVRSTIL 124
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 344 RLVDDP*RFVYPRGFYH 294
RL+D P R ++P GFYH
Sbjct: 140 RLIDRPIRPLFPTGFYH 156
>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLH) nearly identical to magnesium chelatase
subunit GI:1154627 from [Arabidopsis thaliana]; contains
Pfam profile: PF02514 CobN/magnesium chelatase family
protein
Length = 1381
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/72 (22%), Positives = 30/72 (41%)
Frame = +3
Query: 132 QPYSITPRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPR 311
+ Y + P + G + GP D PR IE+ + ++ P L+ P V ++
Sbjct: 370 EKYFVDPVSKQPIVNSAVSLTGFALVGGPARQDHPRAIEALKKLDVPYLVAVPLVFQTTE 429
Query: 312 IYEASRIINQPV 347
+ S + P+
Sbjct: 430 EWLNSTLGLHPI 441
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 249 SPRLIEGPRLIESPRVIESPRIYEAS 326
SPR + PR I SPR + SPR +S
Sbjct: 113 SPRPLYSPRSIGSPRALLSPRFAGSS 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,242
Number of Sequences: 28952
Number of extensions: 230126
Number of successful extensions: 715
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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