Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c09
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.6  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 524 KKYRARCTYCRDWRSVQEG 580
           K+ R RC YCR  + +  G
Sbjct: 132 KRQRNRCQYCRYQKCLNMG 150


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -3

Query: 220 PQRSKQTEWRKVQPWERELVICNGDGLRDNFFVP 119
           P +     W  V  W   L + N   + D FF P
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFP 654


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 248 RCPQKWGSASTKEQTD 201
           +CP+K+G  +  EQ D
Sbjct: 38  QCPEKYGFFADAEQCD 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,926
Number of Sequences: 336
Number of extensions: 2176
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)