Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c09
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    29   1.9  
At5g64670.1 68418.m08127 ribosomal protein L15 family protein          29   2.6  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.9  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.9  
At3g11310.1 68416.m01375 hypothetical protein                          27   7.8  
At2g04900.1 68415.m00509 expressed protein                             27   7.8  
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi...    27   7.8  

>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 237 KVGISFHKGANRLN---GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTA 67
           K+ +S  KG   L+   G +FSHGN+  S+V+    +   +S  G    +A P   M+ A
Sbjct: 461 KITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAVPIAPMRGA 520

Query: 66  KRRGENI 46
             R   +
Sbjct: 521 GYRAPEV 527


>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
          Length = 281

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 618 RPRFLLSS-FLQARPSCTERQSRQ*VQRALYFFVLSTFSLI 499
           +PRF++SS  LQ RPS    Q      RAL F  +  +SL+
Sbjct: 24  KPRFIISSPLLQCRPSPISTQIPTSTSRALSFQGIRAYSLL 64


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-SDG 478
           V GS+   +DDH +     F +   P +SS  D+   +T S+G
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEG 381


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 543 QRALYFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 427
           Q A  + ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 57  QTASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +2

Query: 368 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKKYRARC 544
           EAK   H+ + S   H     +     ++  ++  DGY+  T  +  ++ + +K  A C
Sbjct: 450 EAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALC 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,095
Number of Sequences: 28952
Number of extensions: 199266
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)