Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c08
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 5    HFDKCGLCTFCKQIVDTLSLINHIYFQMS 91
            HF  CG CT  + +  TL  I   + +M+
Sbjct: 1068 HFYVCGDCTMAEDVYQTLKHIIQTHGEMT 1096


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 131 IHYNIYYSSVHSYGTFE 81
           IHYN+ YSS+  YG F+
Sbjct: 596 IHYNLPYSSL--YGRFK 610


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 144 TAGDDDLQLKDELFEKNDKPYFIEKEETTKAILQLFDKKKQELDAQKDAEEEIQKKLKSI 323
           T  +DD+  + E  E+NDK   ++  +  +  +QL D      D + + E  I    K I
Sbjct: 310 TGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCEDERVISIPDKEI 369

Query: 324 KLDSQFE 344
            + S  E
Sbjct: 370 TVPSNEE 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,742
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)