Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c07
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  NHN*KVMLKEPCIVL*ICDICVQYY 153
           +H  KV+ K P I    C+I V+Y+
Sbjct: 128 HHTGKVVWKPPAIYKSFCEIDVEYF 152


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 251 YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVE 370
           ++Y+ KV+ I  S     +LL RF     NLE    I V+
Sbjct: 165 FNYM-KVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 134 IFVSNIIFIYGHLDVSKLTD--F*RRLQSSG*TKMGTREDEYDYL--FKVVLIGDSGVGK 301
           IF+  IIFIY +  ++++TD      LQS    ++   +DEYD +   K    GD  V K
Sbjct: 13  IFLILIIFIYSNETIAQVTDDENCETLQS----EVHITKDEYDEIGRLKRTCSGDISVTK 68


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 134 IFVSNIIFIYGHLDVSKLTD--F*RRLQSSG*TKMGTREDEYDYL--FKVVLIGDSGVGK 301
           IF+  IIFIY +  ++++TD      LQS    ++   +DEYD +   K    GD  V K
Sbjct: 13  IFLILIIFIYSNETIAQVTDDENCETLQS----EVHITKDEYDEIGRLKRTCSGDISVTK 68


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 519 CRTRTWSDGCASC 557
           CR+R  SD C  C
Sbjct: 346 CRSRRHSDSCCLC 358


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 227 WFIRSSVVDVKNRSVSRRQDD 165
           WF  S  +  K R + R +DD
Sbjct: 551 WFTTSGTISEKFRKLIRIEDD 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,202
Number of Sequences: 438
Number of extensions: 2584
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)