Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c06
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 61 6e-10
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 53 2e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 4e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 4e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 1e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 50 1e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 49 3e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.019
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20) 30 1.2
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.4
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 3.8
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.8
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 8.7
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9) 27 8.7
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 27 8.7
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.3 bits (142), Expect = 6e-10
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 285 VDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 461
+D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 1 MDADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGV 59
Query: 462 APETVESRLSSDGVLTITAPRKVPDAVKGERKVP 563
++ +R++ DG+L + A +K P A E K P
Sbjct: 60 DESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 288 DKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 467
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 468 ETVESRLSSDGVLTITAPRK 527
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 267 VGSSIKVDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
+ ++ +++ DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVP 533
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.9 bits (59), Expect(2) = 0.055
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 246 LAAAARDVGSSIKVDKDKFQVNLDVQHFAPE 338
+ A+ G K+D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.055
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 435 RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
R + LP+ +++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 464
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERK 557
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 264 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 464
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERK 557
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 264 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 464
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERK 557
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 294 DKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 470
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 471 TVESRLSSDGVLTITAPRKVPDAVKGERK 557
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 264 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 264 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 464
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERK 557
V++R+S+ G L I A + +P GE +
Sbjct: 62 ASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 264 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 443
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +3
Query: 312 LDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLS 491
LDV+ + PEEIS K +G + V + ++F R + LPEG PE V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGIDPENVTSRIS 70
Query: 492 SDGVLTITAPRKVP 533
+ G L I A + +P
Sbjct: 71 NHGHLHIEARKALP 84
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +3
Query: 282 KVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 461
K +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 462 APETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
+++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +3
Query: 288 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 464
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 465 PETVESRLSSDGVLTITAPRKV--PDAVKGERK 557
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/99 (24%), Positives = 46/99 (46%)
Frame = +3
Query: 270 GSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 449
G+ + DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 450 PEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
P +++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 255 AARDVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 434
A ++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 435 RRYALPE 455
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
Length = 1193
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -3
Query: 596 DLLANGTGLCDGHLSLSLDG----VRHLPRRSDGEYPV**QSRFHSLRRRAFRQRV 441
D ANG GL +G + +D V+H PRR PV + R H+ R Q++
Sbjct: 342 DTFANGVGLLEGQCHIKVDNAVNPVQHAPRR----VPVALRQRLHTELERLVEQKI 393
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.1 bits (57), Expect(2) = 1.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 328 KCCTSKFTWN 299
KCCTS +TWN
Sbjct: 1829 KCCTSNYTWN 1838
Score = 21.4 bits (43), Expect(2) = 1.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1
Query: 325 CCTSKFTWNL 296
CCT ++ WN+
Sbjct: 1860 CCTHEYGWNI 1869
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 460 RRLRLWNRDCHQTGYSPSLRRGRCLTPSRERERC 561
RR+ ++ +D TG S S R LTPS +RE C
Sbjct: 655 RRIEVFGQDEDTTGLSYSGREFDDLTPSEQREAC 688
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 492 SDGVLTITAPRKVPDAVKGE-RKVPIAQTGPVRKEI 596
SD T + PD KGE RKVP+A P++ EI
Sbjct: 285 SDSSPTSDPVSEFPDVFKGEVRKVPLAVREPLKNEI 320
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 473 CGIATVIRRGTHHHCAEE 526
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 510 ITAPRKVPDAVKGERKVPIAQTG 578
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 510 ITAPRKVPDAVKGERKVP 563
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 507 TITAPRKVPDAVKGERKVP 563
T+T+ RKVP+ V RKVP
Sbjct: 91 TVTSQRKVPNMVSSRRKVP 109
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 563
P TV SR + +T+ RKVP+ V RKVP
Sbjct: 109 PNTVTSRRKVPNM--VTSRRKVPNMVTSRRKVP 139
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVP 563
SR+ V P V SR + +T+ R+VP+ V G+RKVP
Sbjct: 204 SRRKVPNMVTSRRKIPNMVTSRRKVPNM--VTSRREVPNMVTGQRKVP 249
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 465 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 563
P V SR T+T+ RKVP+ V RKVP
Sbjct: 99 PNMVSSRRKVPN--TVTSRRKVPNMVTSRRKVP 129
>SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 203 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 66
G++ + WC + LV TA + A I + W Q + FL+ I+
Sbjct: 30 GANNSQYYWCQKQPVFLVPITASITGASIRQYFWCQYQAVFLVPIS 75
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 489 TVAIPQSQAPRLQAARNVGRTALKYTRARLSSLRA 385
T +P QA RL R G +YTR +SSL A
Sbjct: 1773 TAPVPNKQA-RLTIGRQSGNAPYRYTRMYISSLYA 1806
>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
Length = 219
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 376 WKASTKR-RKTSTGIFQGSSSDVTRCLKAR 462
WK S +R R+T+TGI Q +S+ +T+ L+ +
Sbjct: 35 WKNSVQRARRTATGINQRNSNLITQTLREK 64
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = -1
Query: 205 PAATLRRSSGVKARPK-----CWSNRRRGRLEPKSSK 110
PA+TLRRS+ +K P CW+ PK+SK
Sbjct: 1313 PASTLRRSTRLKTTPTHLKDYCWTKHVARASVPKNSK 1349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,818
Number of Sequences: 59808
Number of extensions: 350330
Number of successful extensions: 1128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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