Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c05
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   3.6  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    25   6.3  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 30  MIRSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 167
           ++ S+  C   +L+  A   I A ++S   +AF +   ++PV N++
Sbjct: 141 VMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKV 186


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 224 EYSAESDAGNTAVFWLHSAAALRNADGSGERPLPV 328
           E+S+ + + N +V W   A + +N + S E  LP+
Sbjct: 432 EHSSLAYSNNISVRWFLGATSAQNRNASSEAILPI 466


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 144 PSRSRRMRDAMLTRSTPVSSRQLVRPIIQRNT 49
           P + RR+     + S+ VSS   V P +QRNT
Sbjct: 227 PPKPRRLAARTSSNSSGVSSPTSVPPPVQRNT 258


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 206 QPEQPLEYSAESDAGNTAVFWLHSAAALRNADGSG 310
           +PEQ +EY   ++AG  +  +L+  A L+   G G
Sbjct: 86  KPEQVVEYDTITEAGGLSRDYLNKLAVLKLNGGLG 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,451
Number of Sequences: 5004
Number of extensions: 25993
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)