Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c05
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.70 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_32463| Best HMM Match : Flocculin (HMM E-Value=6.8)                 29   2.8  
SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)             29   3.7  
SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.6  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 26/84 (30%), Positives = 32/84 (38%)
 Frame = +2

Query: 107 VSIASRIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLEYSAESDAGNTAVFWLHSAAA 286
           V   +R  R+    T R P   PP   P  +D   + P E S+ESD+GN           
Sbjct: 260 VRAQTRQHRNESDPTQRSPRSSPP---PFTIDVVIDTPNESSSESDSGNRNTQPTRRPLR 316

Query: 287 LRNADGSGERPLPVHQCVDFAVSF 358
                G G RP   H     A SF
Sbjct: 317 RLGTTGYGPRPGVGHSVSLPAASF 340


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 36   RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 167
            RS+  C  V+L+  A   + A +VS   LAF+   T++P  N++
Sbjct: 2005 RSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKI 2048


>SB_32463| Best HMM Match : Flocculin (HMM E-Value=6.8)
          Length = 107

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 160 FATGKTVAISSNARRNADTEYAGIIASARSTNNTAKHNKI 41
           +  G    + SN      T+    ++ A S NNTAK N++
Sbjct: 61  YCNGGLELVESNHSNGPTTDMTSCVSMAESNNNTAKENEL 100


>SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 3   YSALVFF*IMIRSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQ 164
           + ++ F    + + LL   +++ +RA  MIPA+      +AF+ + T L  A++
Sbjct: 31  FMSVTFLRAPLTTPLLIETIVVFQRAVTMIPAHDSPVASMAFNHMGTKLATASE 84


>SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 113 IASRIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLE---YSAESDAGNTAVFWLHSAA 283
           I +R + D  G+    P R  PD   ++  ++ E+PL    +S  S    T+  W+    
Sbjct: 18  IGNRTKPDCPGYQGF-PHRRRPDNATNECRRKAEKPLAPRTFSIFSRKRQTSNLWVSRGK 76

Query: 284 ALRNADGSGERPL 322
           ALR++  S  R L
Sbjct: 77  ALRSSSQSAVRVL 89


>SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 353 KQRNQHTDVQEEDARQIRQRCVKQRQSATK 264
           K R +HT  Q+ED ++ RQ+ +K+R  + K
Sbjct: 283 KSRIEHTQKQKEDRQKQRQKNLKERSLSKK 312


>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 EPARLPPDTVPHQLDQQPEQPLEYSAESDAGNTA 259
           EP+  PP  VP Q  ++P  P   S ES++ +++
Sbjct: 277 EPSS-PPRLVPRQRSKEPSSPARSSVESNSSSSS 309


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 86   DDTGVLRVSIASRIRRDRDGFTSREPARLPPD 181
            DD G++RV    R+RR   G+  R P  LP D
Sbjct: 1172 DDQGLIRVG--GRLRRADLGYIERHPVLLPND 1201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,027
Number of Sequences: 59808
Number of extensions: 207911
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)