Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c05
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.77 
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    30   1.3  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    28   4.1  
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative            27   9.4  
At3g21380.1 68416.m02699 jacalin lectin family protein similar t...    27   9.4  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 36  RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 167
           RS+  C   LLV  A   + A +V+   LAF+   T++PV N++
Sbjct: 154 RSLSACQGALLVVDAAQGVQAQTVANFYLAFEANLTIVPVINKI 197


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 184 GIRRQASWFATGKTVAISSNARRNADTEYAGIIASARSTNNTAKHNKIDRIMI 26
           G+RR+A  F+T   +AI SN  +    +   + ASA S  N A     D  +I
Sbjct: 38  GLRREAFGFSTSNQLAIRSNRIQFLSRKSFQVSASASSNGNGAPPKSFDYDLI 90


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 374 SREDVGTKQRNQHTDVQEEDARQIRQRCVKQRQSATKIRQ 255
           SR+DVG K  +      EE+ ++  Q+  K+ +S +K RQ
Sbjct: 392 SRKDVGNKSSSSSDSEDEEEEKE--QKAEKEEESTSKKRQ 429


>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
          Length = 681

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 36  RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 167
           RS+  C   LLV  A   + A +++ + LA +    ++PV N++
Sbjct: 171 RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKI 214


>At3g21380.1 68416.m02699 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 455

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 136 ISSNARRNADTEYAGIIASARSTNNTAKHNKID 38
           ISSN   + D  +A + +S+ S+++ ++ NK+D
Sbjct: 112 ISSNVLNSIDVHFAPLPSSSSSSSSLSQANKVD 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,252,766
Number of Sequences: 28952
Number of extensions: 137501
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)