Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c04
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   1.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 LCVRLKCFRYNISSHLYRY 192
           +C R+ C R ++ +H+Y Y
Sbjct: 40  ICERVYCSRNSLMTHIYTY 58


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 273 FFFLRLCYIAVVNNYL 226
           F FL L   AVVNNY+
Sbjct: 286 FVFLSLMEFAVVNNYM 301


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 262 SPVLHRCRQ*LLVHFVQLLP 203
           SPV HR  + + V F+Q+LP
Sbjct: 327 SPVTHRMARWVRVVFIQVLP 346


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 193 NICINGWKC 167
           NIC NGW C
Sbjct: 372 NICSNGWIC 380


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 316 HNLVNGKRPYDYPMSLAHLTVKYNRKMYGKY 408
           HN V GK    +  SL +  VK  R   GK+
Sbjct: 162 HNSVTGKTTACFEPSLDYCVVKIPRWDLGKF 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,089
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)