Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c04
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 31 0.93
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 30 1.2
At3g57830.1 68416.m06447 leucine-rich repeat transmembrane prote... 30 1.2
At3g19780.1 68416.m02504 expressed protein 30 1.6
At5g03060.1 68418.m00254 expressed protein ; expression supporte... 29 2.1
At2g41960.1 68415.m05191 expressed protein 29 2.1
At1g45976.1 68414.m05206 expressed protein 29 2.1
At5g06550.1 68418.m00739 transcription factor jumonji (jmjC) dom... 29 2.8
At2g46680.1 68415.m05825 homeobox-leucine zipper protein 7 (HB-7... 29 2.8
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 2.8
At5g22080.1 68418.m02571 DNAJ heat shock N-terminal domain-conta... 29 3.8
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 5.0
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 28 5.0
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 28 5.0
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport... 28 6.6
At3g10040.1 68416.m01204 expressed protein est match 28 6.6
At2g34780.1 68415.m04270 expressed protein 28 6.6
At2g14000.1 68415.m01556 hypothetical protein 28 6.6
At5g51400.1 68418.m06372 expressed protein contains Pfam profile... 27 8.7
At5g36170.3 68418.m04360 peptide chain release factor, putative ... 27 8.7
At5g36170.2 68418.m04359 peptide chain release factor, putative ... 27 8.7
At5g36170.1 68418.m04358 peptide chain release factor, putative ... 27 8.7
At4g35900.1 68417.m05099 DNA-binding protein-related weak simila... 27 8.7
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 27 8.7
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 466 EKLEYESEAYPFTIQEMMETTRQK--RLAEEEKILKRDQEIVAKMAKLEMWKKELRNKVA 639
EK E + Y ++M E +R+K R+ E++ L + E AKM L++W K+L K A
Sbjct: 290 EKDELD-RVYKQETKKMQELSREKINRIFREKERLTNELE--AKMNNLKIWSKQLDKKQA 346
Query: 640 KKTAEAQ 660
E Q
Sbjct: 347 LTELERQ 353
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Frame = +1
Query: 397 YG-KYGSASGVNPSLCWPTRADIREKLEYESEAYPFTIQEM----------METTRQKRL 543
YG K+G++S ++ PT ADI E+L S T+ ++ ++ + RL
Sbjct: 453 YGRKHGTSSSAAAAVVPPTYADIEEELASRSRNLSSTLHKLHLWEKKLYHEVKAEEKLRL 512
Query: 544 AEEEKI--LKRDQEIVAKMAKLEMWKKELRNKVAK 642
A E+K+ LKR + A+ K++ +K +R+ K
Sbjct: 513 AHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTK 547
>At3g57830.1 68416.m06447 leucine-rich repeat transmembrane protein
kinase, putative several receptor-like protein kinases
Length = 662
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 235 IDDSDVAQAKEEEINKKRNISRLSMSHHNLVNGKRPYDYPMSLAHLTVKY--NRKMYGK- 405
+ D D +++ N+ ISR+ H N+V R Y Y L Y N +Y
Sbjct: 389 LSDGDATWRRKDFENEVEAISRVQ--HPNIVR-LRAYYYAEDERLLITDYIRNGSLYSAL 445
Query: 406 YGSASGVNPSLCWPTR 453
+G S PSL WP R
Sbjct: 446 HGGPSNTLPSLSWPER 461
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/87 (24%), Positives = 41/87 (47%)
Frame = +1
Query: 412 SASGVNPSLCWPTRADIREKLEYESEAYPFTIQEMMETTRQKRLAEEEKILKRDQEIVAK 591
SA G + PT AD++ ++ SEA +E++ E+ + +Q +VA+
Sbjct: 494 SAEGSSEISLHPTEADVQNRVSMSSEAKDEMKSSEIESSSPSD-EEQATTNRSEQLVVAE 552
Query: 592 MAKLEMWKKELRNKVAKKTAEAQAAKD 672
K E++ K+ N K + ++ +D
Sbjct: 553 TDKTEVYLKDNVNGEIKVSLHSEPKED 579
>At5g03060.1 68418.m00254 expressed protein ; expression supported
by MPSS
Length = 292
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 505 IQEMMETTRQKRLAE-EEKILKRDQEIVAKMAKLEMWKKELRNKVAKKTA 651
+ E+M+ QK++ E EEKIL +++ + ++ E + KE++ +++K A
Sbjct: 66 MNEIMKFQYQKQIKELEEKILSLLKDLEKERSEKEEYMKEMKGMISEKEA 115
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 508 QEMMETTRQKRLAEEEKILKRDQEIVAKMAKLEMWKKELRNKVAKKTAEAQ 660
+E++ +Q +L EEE+ KR++E + +++ +K+LR K K E +
Sbjct: 489 KEIVTLEKQNKLLEEEEKEKREEEERKERKRIKEREKKLRRKERLKEKERE 539
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 454 ADIREKLEYESEAYPFTIQEMMETTRQKRLA-EEEKILKRDQEIVAKMAKLEMWKKELRN 630
ADI L+ + + I + ++ +QK ++ EEK++++ +E ++ ++ KEL
Sbjct: 148 ADIDRFLKIQGDQLRHAILDKIKRGQQKTVSLMEEKVVQKLREKDEELERINRKNKELEV 207
Query: 631 KVAKKTAEAQA 663
++ + T EA+A
Sbjct: 208 RMEQLTMEAEA 218
>At5g06550.1 68418.m00739 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 319
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 451 RADIREKLEYE-SEAYPFTIQEMMETTRQKRLAEEEKI 561
R ++ +K + EAYP TIQE+ + + + AEE+++
Sbjct: 267 RENLHDKFKKAIEEAYPGTIQELEKKAEEAKRAEEQRV 304
>At2g46680.1 68415.m05825 homeobox-leucine zipper protein 7 (HB-7) /
HD-ZIP transcription factor 7 identical to
homeobox-leucine zipper protein ATHB-7 (HD-ZIP protein
ATHB-7) (SP:P46897) [Arabidopsis thaliana];
Length = 258
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 466 EKLEYESEAYPFTIQEMMETTRQKRLAEEEKILKRDQEIVA 588
E L+ E +A +Q + E T QK+ EEE+ DQ +VA
Sbjct: 108 ESLKKEKQALVSELQRLKEAT-QKKTQEEERQCSGDQAVVA 147
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 513 DDGDNQAETSS*RGKDTEERSGNCSQNGKIRDVEKGTSKQSRQEN 647
++ +N E + G D E N +NG + EK + S +EN
Sbjct: 185 EEDENDDENTEENGNDEENDDENTEENGNDEENEKEDEENSMEEN 229
>At5g22080.1 68418.m02571 DNAJ heat shock N-terminal
domain-containing protein similar to J-domain protein
Jiv [Bos taurus] GI:15777193; contains Pfam profile
PF00226 DnaJ domain
Length = 246
Score = 28.7 bits (61), Expect = 3.8
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Frame = +1
Query: 148 LKCFRYNISSHL-YRYSTTSEAIEQNEQVIIDDSDVAQAKEEEINKKRNISRLSMSHHNL 324
L CF+ N HL + ++++ +++ + I V K + + L+ + L
Sbjct: 32 LSCFKLNPFEHLNLSFDSSTDDVKRQYRKI--SLMVHPDKCKHPQAQEAFGALAKAQQLL 89
Query: 325 VNGKRPYDYPMSLAHLT---VKYNRKMYGKYGSASGVNPSLCWPTRADIREKLEYESEAY 495
+N + DY ++ H +K RK K +AS + + I E+ E +
Sbjct: 90 LNDQER-DYILTQVHAAKEELKMKRKKQLKKDTASKIKSLVDEGKHEHIYEQSEEFQKEL 148
Query: 496 PFTIQEMM---ETTRQK---RLAEEEKILKRDQEIVAKMAKLEMWKKE 621
++E++ E R+K R++EEE LK+D+ + E+WKK+
Sbjct: 149 KLKVREILTDQEWRRRKMAMRISEEEGRLKKDE-----AEQKEIWKKK 191
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 250 VAQAKEEEINKKRNISRLSMSHHNLVNGKRPYDYPMSLAHLTVKYN 387
V Q E KK+ +SR+ +H + KR + P+S+AH+ K+N
Sbjct: 388 VEQLVIESEEKKKPLSRIWETHEEM-KYKRGSNPPVSVAHIEKKHN 432
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 425 TPLALPYFPYIFLLYFTV 372
TP+++ +FP FLLYF V
Sbjct: 765 TPISMKFFPRFFLLYFLV 782
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 466 EKLEYESEAYPFTIQEMMETTRQKRLAEEEKILK---RDQEIVAKMAKLEMWKKELRNKV 636
EKLE + + +++ ME ++R EEE++++ +++E + + + E+ ++E +
Sbjct: 384 EKLEIQRKKNEERMRKEMERNERERRKEEERLMRERIKEEERLQREQRREVERREKFLQR 443
Query: 637 AKKTAEAQAAKD 672
+ AE + KD
Sbjct: 444 ENERAEKKKQKD 455
>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 476 SNFSLMSALVGQHKLG-FT--PLALPYFPYIFLL 384
S FS+ A KLG FT P ALP FP +F++
Sbjct: 366 STFSVQQASTMNTKLGSFTVPPAALPVFPVVFMM 399
>At3g10040.1 68416.m01204 expressed protein est match
Length = 431
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 154 CFRYNISSHLYRYSTTSEAIEQNEQVIIDDSD--VAQAKEEEINKKRNIS 297
CF + + R + E E+ E + +DS+ + +++EEE KKR IS
Sbjct: 270 CFHAAEAGKMARIAERVEVEEEVESDMAEDSESEMEESEEEETRKKRRIS 319
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 511 EMMETTRQKRLAEEEKILKRDQEIVAKMAKLEMWKKELRNKVAKKTAEAQAA 666
E +T ++K+ A+ E RDQ +A+ + RN+ KK E+Q A
Sbjct: 240 EKQKTLKEKKRADMESAKARDQMKLAEDVSKKFEIVRARNEELKKEMESQTA 291
>At2g14000.1 68415.m01556 hypothetical protein
Length = 346
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 193 STTSEAIEQNEQVIIDDSDVAQAKEEEINKKRNISRLSMSHHNLVNGK--RPYDYPMSLA 366
STT+ E NEQ ++ D + ++R H + N + Y YP SLA
Sbjct: 184 STTNPVFEHNEQYLVPDPSKTVPR-----RRRTAEAQPTDEHVISNDEIYEDYAYPTSLA 238
Query: 367 H 369
H
Sbjct: 239 H 239
>At5g51400.1 68418.m06372 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614
Length = 241
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 510 LYCERVCFGFIFQFLSDVCSSWPA*ARVHS 421
L+C V FG +++ LSD +SW HS
Sbjct: 80 LFCPSVLFGRVYETLSDEETSWKKACICHS 109
>At5g36170.3 68418.m04360 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 391
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 199 TSEAIEQNEQVIIDDSDVAQAKEEEINKKRNISRLSMSHHNL 324
TSE + Q+ + D ++A A+ EEI N+ +L NL
Sbjct: 73 TSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNL 114
>At5g36170.2 68418.m04359 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 455
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 199 TSEAIEQNEQVIIDDSDVAQAKEEEINKKRNISRLSMSHHNL 324
TSE + Q+ + D ++A A+ EEI N+ +L NL
Sbjct: 72 TSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNL 113
>At5g36170.1 68418.m04358 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 456
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 199 TSEAIEQNEQVIIDDSDVAQAKEEEINKKRNISRLSMSHHNL 324
TSE + Q+ + D ++A A+ EEI N+ +L NL
Sbjct: 73 TSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNL 114
>At4g35900.1 68417.m05099 DNA-binding protein-related weak
similarity to DNA-binding factor gmlip15 [Zea mays]
GI:14289167
Length = 245
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 549 RGKDTEERSGNCSQNGKIRDVEKGTSKQSRQENC 650
RG+D+ E SGN I++ E ++R++ C
Sbjct: 205 RGQDSNEGSGNRRHKRMIKNRESAARSRARKQEC 238
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 460 IREKLEYESEAYPFTIQEMMETTRQKRLAEEEKILKRDQEIVAKMAKLEMWKKELRNK 633
+ + ++Y A ++E Q+RL EE + +R+Q+ +++K E + +L+ K
Sbjct: 684 LAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK-ERHESDLKEK 740
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,226
Number of Sequences: 28952
Number of extensions: 268482
Number of successful extensions: 982
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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