Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c02
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   5.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   9.0  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   9.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 389 TNLKTWVIQTRRSLKKK 439
           T + TW    RR LKK+
Sbjct: 129 TQVSTWFANARRRLKKE 145


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 143 KDFNWSNCSALYG 105
           KDF    C+ALYG
Sbjct: 93  KDFQLRLCAALYG 105


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 143 KDFNWSNCSALYG 105
           KDF    C+ALYG
Sbjct: 93  KDFQLRLCAALYG 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,641
Number of Sequences: 336
Number of extensions: 2852
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)