Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11c02
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    41   1e-04
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    35   0.012
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    33   0.037
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.60 
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.6  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.4  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.7  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.7  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 481 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCDSAAA 660
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+ L+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469

Query: 661 Y 663
           Y
Sbjct: 470 Y 470



 Score = 28.7 bits (61), Expect = 0.79
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 502 EAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHA 630
           E I     AI+L+P  A  + ++ Q    L   N CI  C  A
Sbjct: 451 ECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEA 493


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 487 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+L L+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 481 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNK 597
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGE 74


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 659 AAALSQFNXKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 480
           A  +SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772

Query: 479 A 477
           A
Sbjct: 773 A 773


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 101 LIFLCRFR*FVRKKIIAERQQF 36
           +IF C  R F RKK +AE+Q+F
Sbjct: 114 IIFYC-LRHFKRKKFLAEQQEF 134


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 133 LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 258
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  YKKLLSLGYNFFSYKLTKPTKKNELPVQR 116
           YK  L      FS+K+ + T +NEL + R
Sbjct: 296 YKNELQSAEEHFSHKIKELTSENELKISR 324


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 182 WCNSCGCVLHISTKDFNWSN 123
           WC  C C+ H    D+  SN
Sbjct: 366 WCTYCLCLAHYKLGDYEESN 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,085
Number of Sequences: 5004
Number of extensions: 44997
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)