Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11c02
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10) 66 3e-11
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 34 0.12
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 33 0.21
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 31 0.63
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 31 0.84
SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20) 30 1.5
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10) 30 1.9
SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 29 3.4
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
Length = 559
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +1
Query: 352 LDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ----KYDEAINLY 519
+D GVI PD DE MGD + +EAI L+
Sbjct: 13 IDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTLGNLEEAIKLF 71
Query: 520 TAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCDSAAAY 663
T AI NP SA LFAKR ++++ KPNA I+DC A +N DSA Y
Sbjct: 72 TDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQINPDSAQIY 119
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 QKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCD 648
+K + AI A Q+NP SA ++ RG+ + L KD AL L+ D
Sbjct: 96 KKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGHWEKADKDLAQALKLDFD 148
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 478 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXL 639
A +++ EA++ YT I+L LF+ R +LKLNKP + DC L L
Sbjct: 874 AVKREEFQEALDWYTKGIELTKTDHRLFSNRALCHLKLNKPKEALADCESCLKL 927
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 478 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCDSAA 657
A S +AI YT AI L+P + + ++ R + KL+K N ++D + + D
Sbjct: 19 ALSAGDTQKAIEFYTEAILLDPANHVFYSNRSAAFAKLSKYNEALEDARKCVEIKPDWGK 78
Query: 658 AY 663
Y
Sbjct: 79 GY 80
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 478 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCDSAA 657
A+ ++ +D A + A +LNP + + + + CIK+C A+ + + A
Sbjct: 240 AYKKKDFDTAHKHFNNAKELNPDNMTFYTNNAAAFFEEGNYEECIKECLEAVEVGRSNRA 299
Query: 658 AY 663
+
Sbjct: 300 EF 301
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 34.3 bits (75), Expect = 0.090
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 478 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNK 597
AF +QKY+EA+ LYT A+ + + + R Q+ K K
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQLDKKCIK 169
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 505 AINLYTAAIQLNPQSAL-LFAKRGQVYLKLNKPNACIKDCTHALXL 639
A++ +T AI L+P+ A + +RG+ Y KL KP ++D T L +
Sbjct: 627 AVSYFTLAIILSPKQAWEAYHQRGKRYFKLKKPRHALQDFTAVLSM 672
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 481 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
F E Y+ AI YT AI+L + R YLK + D A+ L+
Sbjct: 198 FKEGNYNSAITFYTQAIELKADVPAYYGNRSFCYLKTEYYGLALADANKAIQLD 251
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +1
Query: 472 MRAFSEQKYDEAINLYTAAIQL------NPQSAL--LFAKRGQVYLKLNKPNACIKDCTH 627
MR + +Y EA+ Y+ AI + + +SAL L R ++ + C+KDCT
Sbjct: 423 MRLYKIGRYAEAVEKYSQAIDVLWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTS 482
Query: 628 ALXLNCDSAAAY 663
+L L DS A+
Sbjct: 483 SLNLIPDSLKAH 494
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 478 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
A S+ + +A+ LY+ AI+L+P + +L+ R ++ + ++D A LN
Sbjct: 32 ACSKGDFQKAVELYSEAIKLDPNNHVLYGNRSAACIRTWQLEQALEDGKKAAELN 86
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = +1
Query: 481 FSEQKYDEAINLYTAAIQL----------NPQSALLFAKRGQVYLKLNKPNACIKDCTHA 630
F Y+ A++ Y AA++L + A+++ R LKL K A IKD T A
Sbjct: 20 FKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQLKLEKYEAAIKDATKA 79
Query: 631 LXL 639
L +
Sbjct: 80 LDI 82
>SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)
Length = 1195
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 505 AINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
A++ Y AI++NP A F +RG +KL+ + D AL +N
Sbjct: 1097 ALDAYNEAIKVNPDYAEAFYQRGLTKMKLSHTKG-VHDFNRALAIN 1141
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 472 MRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLN 594
M F+ + + A+N +T ++ +PQ + + RG V+ K++
Sbjct: 107 MYRFNNENWTGAVNDFTEILEQDPQDSRAYTYRGTVFAKMD 147
>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
Length = 452
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 490 QKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
++Y AI+LY +I +P + + +R ++ LNK + D + LN
Sbjct: 298 KEYRTAIDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDFEECIKLN 348
>SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 493 KYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHAL 633
+YD+A++ + AA+ P+ ALL+ + G + + HAL
Sbjct: 223 EYDKAVDCFQAAVIARPEDALLWNRLGATLANGGRSEEAVDAYRHAL 269
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 481 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLN 642
FS KY EA++ ++ P+ AL++ G+VY KL + + + + A+ L+
Sbjct: 1514 FSIDKYQEALHELEDLKKIVPREALVYFLIGKVYKKLGQAHLAQMNFSWAIDLD 1567
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 481 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALXLNCDSAAA 660
F ++ D + + T AI+ NP A ++ G V+ + + + + HA+ L D
Sbjct: 92 FQCRRLDRSAHFSTLAIKQNPMLAEAYSNLGNVFKERGQLKDALANYRHAVKLKPDFIDG 151
Query: 661 Y 663
Y
Sbjct: 152 Y 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,655
Number of Sequences: 59808
Number of extensions: 330232
Number of successful extensions: 710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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