Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b23
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 105 8e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 29 0.87
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 1.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 26 4.6
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 6.1
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 26 6.1
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 6.1
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 6.1
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc... 25 8.1
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 105 bits (251), Expect = 8e-24
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = +3
Query: 216 DELPDVTDVLKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIG 395
++L + + L + + I F+TY + + + FNGGKDC VL + I LK+ YK
Sbjct: 22 EKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLKEKYKEQAQA 81
Query: 396 K--NLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLM 569
K N+ V++R + F E++ FV E + Y L + MKE + L++ ++A L+
Sbjct: 82 KLSNIPFVFVRPRDEFPEMDDFVNECQSKYRLNIIKISLPMKEAFCKFLKEHKHIQAILI 141
Query: 570 GTRRSDPYSENLQFVQKTDANWPQIMRISPLLNWFYHHIWSYILQ 704
G RR DP+ + + TD WP+ MRI P+L+W Y IW +L+
Sbjct: 142 GIRRLDPHGLHRIAFEVTDKGWPKFMRIQPILDWSYTEIWDLLLE 186
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +3
Query: 360 VLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLE 539
VLK ++K+ +N K+V F ++EKF +EI+ + KV + E +E ++ E
Sbjct: 615 VLKGVFKNSS-AQNTKLV--NRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAE 671
Query: 540 KDGILKAG 563
+D LK G
Sbjct: 672 RD--LKKG 677
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 479 WSDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQRE 601
WS +S E ++T + G+N E L+ + T+R ++ E
Sbjct: 35 WSSEESESEDKESNLTSSENIGKNPERELNSDGTDRIIEEE 75
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 177 RANTDMQPTCGGMDELPDVTDVLKEAEQVIRQCFQTY 287
RA QPT +D L D ++E V+ CF TY
Sbjct: 641 RAIEASQPTYSHLDALLARIDGANDSESVLMNCFHTY 677
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 339 LLDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVE 443
L D I+ + Y CD KNLKV R K F E
Sbjct: 186 LQDAYISFFQAFYVRCDSVKNLKVALKRVKHIFYE 220
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 364 LKIFTRAAT*GRTLKSST*GQRDRLSKSRNSFKRLKC 474
+K AAT G + +SS RLSKS S +KC
Sbjct: 274 MKAKAAAATKGNSSESSKNADLKRLSKSNASIAEVKC 310
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 587 SLQREFAICSENGCELASDNENISAIELVL 676
S+ +F+ +N C+L D+E++ ++E+ L
Sbjct: 121 SIDIQFSAFIKNLCQLVKDSEDVQSVEISL 150
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 479 IIHFNLLNEFLDFDKRSLCPYVDDFKVLPY 390
I+ LNE+L++ R L VD K LP+
Sbjct: 102 ILTARFLNEYLEYYARLLAEVVDATKFLPF 131
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 654 SPLLNWFYHHIWSYI 698
SP LNW HH+ YI
Sbjct: 546 SPFLNWTSHHLQRYI 560
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 355 IVMSNNTVQSFPPLKHKNTSSNA 287
++ S NTV S+P +KH++ S A
Sbjct: 96 VIDSRNTVLSYPLMKHRDLSKPA 118
>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +3
Query: 642 IMRISPLLNWFYHHIWSYIL 701
+++I+PL NW + + +YI+
Sbjct: 177 VLKINPLANWSFTEVHNYII 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,834
Number of Sequences: 5004
Number of extensions: 53878
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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