Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b23
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 33 0.22
06_03_0619 + 22801576-22802016,22802111-22802596 31 0.90
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 29 2.8
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 29 3.6
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 29 4.8
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745... 28 6.4
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 28 8.4
08_01_0397 - 3509186-3510291,3510322-3512335 28 8.4
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 428 GTVCRNREIRSRD*NVLWSDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQREFA 607
G CRN+E+R D + NRRR E T +R NI G L ER ++ E
Sbjct: 135 GLTCRNQELRRED------RTRGNRRRIEKG-TRRVRSSINIVGDLGDGRVERDVREEAG 187
Query: 608 I 610
+
Sbjct: 188 V 188
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 488 VKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQREFAIC 613
VK+ R R +GDV + +R + ++G+L+ + + + R+ C
Sbjct: 77 VKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGC 118
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +3
Query: 342 LDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKET 521
+ + I V K+ +S +GK+ K + + ++IE F+Q+ K+Y + +KV E ++
Sbjct: 350 IQVEILVEKESQRSIILGKDGKAIKMLATASRLDIEDFLQK-KVYLEIMVKVKENWRQDE 408
Query: 522 LQRLLEKDG 548
L LL++ G
Sbjct: 409 L--LLKRYG 415
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 521 VTEAIREGRNIEGRLDGNETERSLQREFAI-CSENGCELASDNENISAIELVLSP-HMEL 694
+TE++ E +N+E + +E + +L +FA + A ++++ IE +L+P EL
Sbjct: 93 LTESLLESKNLEAKKINDEKKAALAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAEL 152
Query: 695 HIA 703
+A
Sbjct: 153 KLA 155
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 2 NLTKDNILAVILKNYFHHKS*IIKKGFRT*NLYKTVKSLNKNCLSEL 142
N +DN + I+KNY HH+ I + + Y V ++ K + L
Sbjct: 592 NEDEDNFITKIVKNYLHHELIFIPINMKDNHWYLAVVNIEKKQIQVL 638
>07_01_1105 - 10173039-10173156,10173715-10173716,10174550-10174584,
10174696-10174765,10175163-10176707,10176770-10178062
Length = 1020
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = -1
Query: 299 LVQCVRLEALPNYLLGFLQDISNVR*LVHASARRLHVSVCSMIRLDTVLLWCTTH*DNFY 120
+V+C +L+ LPN+ G Q I N L+ + +H ++ I + L + +N
Sbjct: 914 IVRCGKLKVLPNFTSGPKQRIRNCEKLLQPLCQNIHWNLMEYIPPSSELSYTCMAEENL- 972
Query: 119 LTISLFCTNFKSEILFLLFNFCG 51
IS NF I L +F G
Sbjct: 973 --ISRIDMNFSGSIEPELASFPG 993
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 107 LFCTNFKSEILFLLF 63
LFCTNF S I+FL F
Sbjct: 389 LFCTNFLSSIIFLYF 403
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/93 (25%), Positives = 38/93 (40%)
Frame = +2
Query: 320 RKRLHSIIRHHNKRT*RYLQELRHREEP*SRLHKDKGTVCRNREIRSRD*NVLWSDVKSN 499
R R S RHH++ + R R+ R H++K R+ R R+ + +
Sbjct: 32 RDRERSSSRHHHRED---RDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERA 88
Query: 500 RRRNEGDVTEAIREGRNIEGRLDGNETERSLQR 598
RRR E D E R R + + +R +R
Sbjct: 89 RRREERDREERSRR-REAAAEEEEEDVDRDRKR 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,115
Number of Sequences: 37544
Number of extensions: 317555
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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