Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b23
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)         121   7e-28
SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)                    29   4.9  
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score =  121 bits (291), Expect = 7e-28
 Identities = 61/153 (39%), Positives = 89/153 (58%)
 Frame = +3

Query: 243 LKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVYIR 422
           LK A  VI++  + + LDE+ + FNGGKDCTVLL I    +       ++ K +  +Y+R
Sbjct: 299 LKGAWAVIQESLKLFRLDELCISFNGGKDCTVLLYIMYAAVAQ--SMAEVPK-INALYVR 355

Query: 423 TKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYSEN 602
              PF E E FV+E    Y L L    G++K  L+ L +    +KA LMGTRR DP++E 
Sbjct: 356 HDSPFKEAENFVEETTRLYNLNLICMSGKIKPALEELKKSHPNIKAILMGTRRHDPFTEK 415

Query: 603 LQFVQKTDANWPQIMRISPLLNWFYHHIWSYIL 701
           L     TD  WP+ +RI+P+L+W +  +WS +L
Sbjct: 416 LHTFSWTDQGWPEYLRINPILDWNHQDVWSILL 448


>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +2

Query: 272 MLPNVRIGRGILMFQRRKRLHSIIRHHNKRT*RYLQELR----HREEP*SRLHKDKGTVC 439
           ++ NV   + +L   R+K L+           R+L  +R     + E   R   D  T+ 
Sbjct: 11  VIDNVTRSKNMLTSSRQKYLYFTKETSYGNQTRFLLRIRVSSTRKRENDDRKRNDLKTIS 70

Query: 440 RNREIRSRD*NVLWSDVKSNRRRNEGDVTEA 532
           R  +  +   +V W   K  R  N+G +T++
Sbjct: 71  RVEQFENDTLSVSWGRTKKKRFENDGVITQS 101


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 387 DIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKE-TLQRLLEKDGILKA 560
           D  K +KVVY+R   P +  EK  +E    YG   +V   ++K+       E+D  LKA
Sbjct: 323 DAMKKVKVVYLRNLSPSITEEKLKEEYSQ-YGAVDRVK--KLKDYAFVHFTERDHALKA 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,923,714
Number of Sequences: 59808
Number of extensions: 380679
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)