Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b23
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.40 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.40 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.2  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = +2

Query: 377 QELRHREEP*SRLHKDKGTVCRNREIRSRD*NVLWSDVKSNRRRNEGDVTEAIREGRNIE 556
           +E R ++    +LH +K  +   R  R R     +S  +   + +  +  E  +     +
Sbjct: 232 REYRKKDRQYEKLHNEKEKLLEERTSRKR-----YSRSREREQNSYKNEREYRKYRETSK 286

Query: 557 GRLDGNETERSLQREFAICSENGCELASDNENISAIEL 670
           GR   + TER   +E  I S N     + N N ++ +L
Sbjct: 287 GR-SRDRTERERSKETKIISSNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = +2

Query: 377 QELRHREEP*SRLHKDKGTVCRNREIRSRD*NVLWSDVKSNRRRNEGDVTEAIREGRNIE 556
           +E R ++    +LH +K  +   R  R R     +S  +   + +  +  E  +     +
Sbjct: 243 REYRKKDRQYEKLHNEKEKLLEERTSRKR-----YSRSREREQNSYKNEREYRKYRETSK 297

Query: 557 GRLDGNETERSLQREFAICSENGCELASDNENISAIEL 670
           GR   + TER   +E  I S N     + N N ++ +L
Sbjct: 298 GR-SRDRTERERSKETKIISSNNYNYKNYNNNYNSKKL 334


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +3

Query: 414 YIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPY 593
           Y+ TK PF++ E     ++ Y G    V +    E++ +++ K+G+L  GLM       +
Sbjct: 278 YVNTK-PFMKSEYGANNVQ-YQG----VQDIFNTESIAKIMSKNGVLFFGLMNNSAIGCW 331

Query: 594 SEN 602
           +E+
Sbjct: 332 NEH 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,103
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)