Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b23
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS) ...    85   3e-17
At3g48150.1 68416.m05251 cell division cycle family protein / CD...    29   2.3  
At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protei...    28   5.3  
At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protei...    28   5.3  
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf...    28   5.3  
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf...    28   5.3  
At1g24764.1 68414.m03106 expressed protein                             28   5.3  
At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family...    27   9.3  
At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family...    27   9.3  
At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family...    27   9.3  
At2g45990.2 68415.m05719 expressed protein                             27   9.3  
At2g45990.1 68415.m05718 expressed protein                             27   9.3  

>At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS)
           reductase family protein low similarity to SP|P38913 FAD
           synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae};
           contains Pfam profiles PF01507: Phosphoadenosine
           phosphosulfate reductase family, PF00994: Probable
           molybdopterin binding domain
          Length = 497

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
 Frame = +3

Query: 261 VIRQCFQTYALDEVFLCFNGGKDCTVLLDITIN--VLKDIYKSCDIGK----NLKVVYIR 422
           VI++    Y+++EV   FNGGKD TVLL +      L    ++C  G      ++ +Y  
Sbjct: 25  VIKRALALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKKEQTCSNGGLSSFPVRTIYFE 84

Query: 423 TKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYSEN 602
           +   F EI  F  +    Y L L +   + K  L+ LL+ + I +A  +G R  DP +  
Sbjct: 85  SPSAFTEINAFTYDAAQTYNLQLDIIRQDFKSGLEALLKANPI-RAIFLGVRIGDPTAVG 143

Query: 603 LQFVQKTDANWPQIMRISPLLNWFYHHIWSYIL 701
            +    +   WP  MR++P+L+W Y  +W+++L
Sbjct: 144 QEQFSPSSPGWPPFMRVNPILDWSYRDVWAFLL 176


>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
           family protein similar to cell division cycle protein 23
           [Homo sapiens] GI:3283051, anaphase-promoting complex
           subunit 8 [Homo sapiens] GI:6180017; contains Pfam
           profile PF00515: TPR Domain
          Length = 579

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 270 QCFQT---YALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVY 416
           +C+QT   Y L+E   C+    +CT    I +N L  +++   +G+N +  Y
Sbjct: 449 KCYQTEQLYMLEEAIKCYKRAVNCTDTEGIALNQLAKLHQK--LGRNEEAAY 498


>At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 517

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 333 TVLLDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGE 509
           T +LDIT+N  ++ Y S  +    K++ +  K   V  E+  + +K Y GL    ++ +
Sbjct: 73  TGVLDITLNDFQEGYFSLSLEDREKLLLVLAKEYDVNREQVRELVKQYLGLETPASDDD 131


>At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 518

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 333 TVLLDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGE 509
           T +LDIT+N  ++ Y S  +    K++ +  K   V  E+  + +K Y GL    ++ +
Sbjct: 74  TGVLDITLNDFQEGYFSLSLEDREKLLLVLAKEYDVNREQVRELVKQYLGLETPASDDD 132


>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   ELDKR*YFGCNT*KLLSPQKLNNKKRISDLKFVQNS 108
           E+D   YFG N    + P K+NN+K      F++ S
Sbjct: 260 EVDSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKS 295


>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   ELDKR*YFGCNT*KLLSPQKLNNKKRISDLKFVQNS 108
           E+D   YFG N    + P K+NN+K      F++ S
Sbjct: 260 EVDSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKS 295


>At1g24764.1 68414.m03106 expressed protein
          Length = 607

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 521 VTEAIREGRNIEGRLDGNETERSLQREFAI-CSENGCELASDNENISAIELVLSP-HMEL 694
           +TE+I E +N+E +    E + S+  +FA   +      A  ++++  IE +L+P   EL
Sbjct: 131 LTESILESKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAEL 190

Query: 695 HIA 703
            +A
Sbjct: 191 KLA 193


>At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family
           protein
          Length = 445

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
 Frame = +2

Query: 482 SDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSL------QREFAI-CSENGCELAS 640
           S V   RRR + D  E   E R+     + +E  R L           + C ++GC L  
Sbjct: 23  SSVMMTRRRPDSDFIEVSDENRSFALFKEDDEKNRDLGLVDDGSTNLVLQCHDDGCSLEK 82

Query: 641 DNEN 652
           DN N
Sbjct: 83  DNSN 86


>At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family
           protein
          Length = 358

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
 Frame = +2

Query: 482 SDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSL------QREFAI-CSENGCELAS 640
           S V   RRR + D  E   E R+     + +E  R L           + C ++GC L  
Sbjct: 23  SSVMMTRRRPDSDFIEVSDENRSFALFKEDDEKNRDLGLVDDGSTNLVLQCHDDGCSLEK 82

Query: 641 DNEN 652
           DN N
Sbjct: 83  DNSN 86


>At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family
           protein
          Length = 352

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
 Frame = +2

Query: 482 SDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSL------QREFAI-CSENGCELAS 640
           S V   RRR + D  E   E R+     + +E  R L           + C ++GC L  
Sbjct: 23  SSVMMTRRRPDSDFIEVSDENRSFALFKEDDEKNRDLGLVDDGSTNLVLQCHDDGCSLEK 82

Query: 641 DNEN 652
           DN N
Sbjct: 83  DNSN 86


>At2g45990.2 68415.m05719 expressed protein
          Length = 268

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 411 VYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGL-MGT 575
           +Y    GP VE+ K +Q+   + GLTL   E  +  TL+ ++++  + K  L +GT
Sbjct: 183 IYGLGSGPKVEVLKLLQDKPEHQGLTLHFVEDRL-ATLKNVIKEPELDKWSLYLGT 237


>At2g45990.1 68415.m05718 expressed protein
          Length = 268

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 411 VYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGL-MGT 575
           +Y    GP VE+ K +Q+   + GLTL   E  +  TL+ ++++  + K  L +GT
Sbjct: 183 IYGLGSGPKVEVLKLLQDKPEHQGLTLHFVEDRL-ATLKNVIKEPELDKWSLYLGT 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,724
Number of Sequences: 28952
Number of extensions: 272807
Number of successful extensions: 776
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)